Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,373,645 – 6,373,740 |
Length | 95 |
Max. P | 0.995280 |
Location | 6,373,645 – 6,373,740 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.60 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -15.80 |
Energy contribution | -16.30 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.09 |
Mean z-score | -2.36 |
Structure conservation index | 0.57 |
SVM decision value | 2.56 |
SVM RNA-class probability | 0.995280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6373645 95 + 22224390 U----------GUUAGUUGUCAGUGGGCUGAGAUUU----CGAGAGAAU----------UAAGAUCUAGAUGCUAGA-UCUUGAUCUCUGCACUCUGCAGAUGCUUCCAGCUUCGAAAAA .----------...(((((..((((..((((((...----..(((((.(----------((((((((((...)))))-)))))))))))....))).))).))))..)))))........ ( -29.60) >DroSec_CAF1 3707 95 + 1 U----------GAUUGUUGUCAGUGGGCUGAGAUUU----CGAGAGAAU----------UAAGAUCUAGAUGCUAGA-UCUUGAUCUCUGCUCUCGGCAGAUGCUUCCAGCAUCGGAGAA .----------(((.((((..((((.(((((((...----(.(((((.(----------((((((((((...)))))-)))))))))))).)))))))...))))..)))))))...... ( -36.90) >DroEre_CAF1 4409 113 + 1 CA----ACCAAUCCAAUAAUCAGUGAGCUGAGAUUUAGAUUGAGAGAAUAUCCGACACCUUAGCUCUAUA---UAGAUUCUUGAUCUCUGCUCUCUGCAGAUUCUUCCAGCAUCAGAAAA ..----.................(((((((.((....(((..((((..(((..(((......).))...)---))..))))..)))(((((.....)))))....)))))).)))..... ( -22.80) >DroYak_CAF1 26213 113 + 1 CAAACCACCAAUCAAAUAAUCAGUGAGCUGAGAUUU----UGAGAGUAUAUUCGACAACUAAGAAAUAUG---UAGAUUCUUGAUCUCUGCUCUCUGCAGAUUCUUCCAGCAUCAGAAAA ...........((.......(((.((((.((((((.----.(((..(((((((.........))...)))---))..)))..)))))).)))).)))..(((.(.....).))).))... ( -21.90) >consensus C__________GCUAAUAAUCAGUGAGCUGAGAUUU____CGAGAGAAU__________UAAGAUCUAGA___UAGA_UCUUGAUCUCUGCUCUCUGCAGAUGCUUCCAGCAUCAGAAAA .......................(((((((.((..........................(((((((((.....)))).)))))...(((((.....)))))....)))))).)))..... (-15.80 = -16.30 + 0.50)
Location | 6,373,645 – 6,373,740 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.60 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -13.25 |
Energy contribution | -14.25 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.50 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850347 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6373645 95 - 22224390 UUUUUCGAAGCUGGAAGCAUCUGCAGAGUGCAGAGAUCAAGA-UCUAGCAUCUAGAUCUUA----------AUUCUCUCG----AAAUCUCAGCCCACUGACAACUAAC----------A ..((((((.((.....)).(((((.....)))))((..((((-(((((...))))))))).----------..))..)))----)))..((((....))))........----------. ( -24.60) >DroSec_CAF1 3707 95 - 1 UUCUCCGAUGCUGGAAGCAUCUGCCGAGAGCAGAGAUCAAGA-UCUAGCAUCUAGAUCUUA----------AUUCUCUCG----AAAUCUCAGCCCACUGACAACAAUC----------A ......(((((.....))))).((.((((.((((((..((((-(((((...))))))))).----------..))))).)----...)))).))...............----------. ( -29.10) >DroEre_CAF1 4409 113 - 1 UUUUCUGAUGCUGGAAGAAUCUGCAGAGAGCAGAGAUCAAGAAUCUA---UAUAGAGCUAAGGUGUCGGAUAUUCUCUCAAUCUAAAUCUCAGCUCACUGAUUAUUGGAUUGGU----UG ...(((((((((....((.(((((.....)))))..)).....(((.---...))).....))))))))).......(((((((((...((((....))))...))))))))).----.. ( -28.80) >DroYak_CAF1 26213 113 - 1 UUUUCUGAUGCUGGAAGAAUCUGCAGAGAGCAGAGAUCAAGAAUCUA---CAUAUUUCUUAGUUGUCGAAUAUACUCUCA----AAAUCUCAGCUCACUGAUUAUUUGAUUGGUGGUUUG .........((((((.((.(((((.....)))))..))(((((....---.....)))))....................----...)).))))((((..(((....)))..)))).... ( -22.70) >consensus UUUUCCGAUGCUGGAAGAAUCUGCAGAGAGCAGAGAUCAAGA_UCUA___UAUAGAUCUUA__________AUUCUCUCA____AAAUCUCAGCCCACUGACAACUAGA__________A .........((((((....(((((.....)))))....((((.((((.....))))))))...........................)).)))).......................... (-13.25 = -14.25 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:19 2006