Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,373,521 – 6,373,616 |
Length | 95 |
Max. P | 0.757701 |
Location | 6,373,521 – 6,373,616 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 77.40 |
Mean single sequence MFE | -24.70 |
Consensus MFE | -18.06 |
Energy contribution | -17.73 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.25 |
Mean z-score | -1.49 |
Structure conservation index | 0.73 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6373521 95 + 22224390 AAUAUUUUCGGCCACUCAAUACGACAUUUGUA----UUAUUGGCGGUUGACCUCCUGGUCA---------------CGAUGUGUUUUCCACUCCAAAUCGCUAAUGGAAAAACU ....(((((........(((((((...)))))----))((((((((((((((....)))).---------------.((.(((.....)))))..)))))))))).)))))... ( -23.80) >DroSec_CAF1 3583 95 + 1 AAUAUUUUCGGCCACUUGAUUCGACAUUUGUA----UUAUUGGCGGUUGACCUCCUGGUCA---------------CGAUGUGUUUUCCACUCCAAAUCGCGAAUGGAAAAACU .......(((((((..((((.(((...))).)----))).))))...(((((....)))))---------------)))....(((((((.(((.....).)).)))))))... ( -22.50) >DroEre_CAF1 4257 114 + 1 AAUAUUUUUGGGCAUUUAAUUCGACAUAUGUAUGUACUAUUGGCGGUUGACCUCCUGGUCACAACAUUGCCGUCAACGAUGUGUUUUUCAUUUCGAAUCUCCGGUGGGAAAACU ...........(((((.......((((....))))....(((((((((((((....))))).......)))))))).)))))(((((((...(((......)))..))))))). ( -27.81) >consensus AAUAUUUUCGGCCACUUAAUUCGACAUUUGUA____UUAUUGGCGGUUGACCUCCUGGUCA_______________CGAUGUGUUUUCCACUCCAAAUCGCCAAUGGAAAAACU ....................................((((((((((((((((....)))).................(..(((.....)))..).))))))))))))....... (-18.06 = -17.73 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:17 2006