Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,370,681 – 6,370,786 |
Length | 105 |
Max. P | 0.730445 |
Location | 6,370,681 – 6,370,786 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 83.26 |
Mean single sequence MFE | -40.20 |
Consensus MFE | -27.56 |
Energy contribution | -26.88 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.19 |
Mean z-score | -1.81 |
Structure conservation index | 0.69 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730445 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6370681 105 + 22224390 CGUCGUCAUCGAGCGAUGAUUCGAGUGAUGACUCCUCCACAUCGAGCGAUUCGUCUGA------AUCGGAUUCCAGCGACAACGAGGAGUCCAGCACCAGUGAAUCGGAUG (((((((((((..(((....)))..)))))))..(((......)))(((((((.(((.------...(((((((..((....)).))))))).....)))))))))))))) ( -37.80) >DroSec_CAF1 757 105 + 1 CGUCGUCAUCGAGCGAUGAUUCGAGUGAUGACUCCUCCACGUCGAGCGAUUCGUCCGA------AUCCGAUUCCAGCGACAACGAGGAGUCCAGCACCAGUGAAUCGGAUG .(((((......)))))((((((.(((..((((((((...((((...((.(((.....------...))).))...))))...))))))))...)))...))))))..... ( -37.10) >DroEre_CAF1 1265 100 + 1 --------UCG---GACGACUCGAGUGAUGAGUCCACCUCGUCGGGCGAUUCGUCCGAGUCCGAGUCCGAUUCCAGCGAUAACGAGGAGUCCAGCACCAGUGAAUCGGAUG --------(((---(((((.(((..(((((((.....)))))))..))).))))))))((((((.((.((((((..((....)).))))))..((....)))).)))))). ( -42.60) >DroYak_CAF1 23001 108 + 1 CGUCGUCAUCG---GACGACUCGAGUGAGGACUCCACCACGUCGGGCGAUUCGUCCGAGUCCGAGUCCGAUUCCAGCGACAAUGAGGAGUCGAGCACCAGUGAAUCGGACG ..(((...(((---(((((((((((((..(....)..))).)))))....))))))))...)))(((((((((...((((........)))).((....))))))))))). ( -43.30) >consensus CGUCGUCAUCG___GACGACUCGAGUGAUGACUCCACCACGUCGAGCGAUUCGUCCGA______AUCCGAUUCCAGCGACAACGAGGAGUCCAGCACCAGUGAAUCGGAUG ........(((...(((((.(((..(((((.........)))))..))).))))))))......((((((((((.(((((........)))..))....).))))))))). (-27.56 = -26.88 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:16 2006