Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,355,182 – 6,355,285 |
Length | 103 |
Max. P | 0.693202 |
Location | 6,355,182 – 6,355,285 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.27 |
Mean single sequence MFE | -18.53 |
Consensus MFE | -10.81 |
Energy contribution | -11.93 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.92 |
Structure conservation index | 0.58 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6355182 103 + 22224390 AAACAUUGAAUAUUUCGAAUGCCGUAAA-CUA-UAAACUCCCUUCAAAUUGGCU----------UCAAAUUAACCAAAUUAGGCUUAUUCAAUGAUA----UGACAAGUCC-CAAAAAUA ...(((((((((....(((.((((....-...-................)))))----------)).......((......))..)))))))))...----..........-........ ( -14.90) >DroSec_CAF1 39232 117 + 1 AAACAUUGAAUAGUUCGAAUGCCGCAAG-CUU-UAAACUUCCUGCAAAUUGGCUUUAAAAGUCUUCAAAUUAACCA-AUUCGGCUUAUUCAAUGAUACCAAUACCAAGUCCCCAAAAAUA ...((((((((((..(((((((.(.(((-...-....))).).)).....((((.....)))).............-)))))..)))))))))).......................... ( -20.50) >DroEre_CAF1 37210 112 + 1 AAACAUUGUAUAGUUCGAAUACCGGAAGGCUUUCAAAUCCCCAGCAAAUCGGCUUUAAAAGUGCUCAAAUAAAGCA-AUUCGGCUUAUUCAAUGAUA------CCAAGUCC-CAAUAAUA ...(((((.((((..(((((.((((...(((...........)))...)))).........((((.......))))-)))))..)))).)))))...------........-........ ( -20.20) >consensus AAACAUUGAAUAGUUCGAAUGCCGCAAG_CUU_UAAACUCCCUGCAAAUUGGCUUUAAAAGU__UCAAAUUAACCA_AUUCGGCUUAUUCAAUGAUA____U_CCAAGUCC_CAAAAAUA ...((((((((((.((((((((((.........................))))........................)))))).)))))))))).......................... (-10.81 = -11.93 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:11 2006