Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,351,434 – 6,351,554 |
Length | 120 |
Max. P | 0.500000 |
Location | 6,351,434 – 6,351,554 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -22.27 |
Consensus MFE | -19.27 |
Energy contribution | -19.60 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.87 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6351434 120 + 22224390 UCUUCCUUUCUAAGCAAAAAUUUGUUAUCGCCAUUGGCAGGCUGAACCAGUGAAAAAUACUAUAUUACAAGGUACAUAUACAUCUCUAUAUAUAGUAUAUAUACCUCUAACGAGCCAUCC ............(((((....)))))...(((...))).((((......((((...........)))).(((((.((((((.............)))))).)))))......)))).... ( -19.92) >DroSec_CAF1 35443 120 + 1 UCUUCCUUUCUAAGCAAAAAUUUGUUAUCGCCAUUGGCAGGCUGAACCAGUGAAAAAUACUAUAUUACAAGGUACAUAUACAUCUCUAUAUAUAGUAUAUAUAGCUCUAACGAGCCAUCC ((..(((.....(((((....)))))...(((...))))))..))....(((....(((((((((....((((........))))....))))))))).....((((....))))))).. ( -23.00) >DroEre_CAF1 33564 120 + 1 UCUUCCGUUCUAAGCAAAAAUUUGUUAUCGCCAUUGGCAGGCUGAACCAGUGAAAAAUACUAUAUUACAAGGUACAUAUACAUCUCAAUAUAUAGUAUAUAUAGCUCUAACGAGCCAUCC ......((((..(((((....)))))...(((.......))).))))..(((....(((((((((....((((........))))....))))))))).....((((....))))))).. ( -23.90) >consensus UCUUCCUUUCUAAGCAAAAAUUUGUUAUCGCCAUUGGCAGGCUGAACCAGUGAAAAAUACUAUAUUACAAGGUACAUAUACAUCUCUAUAUAUAGUAUAUAUAGCUCUAACGAGCCAUCC ............(((((....)))))...(((...))).((((.....(((.....(((((((((....((((........))))....))))))))).....)))......)))).... (-19.27 = -19.60 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:10 2006