Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,348,955 – 6,349,057 |
Length | 102 |
Max. P | 0.969842 |
Location | 6,348,955 – 6,349,057 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.35 |
Mean single sequence MFE | -33.83 |
Consensus MFE | -22.35 |
Energy contribution | -22.47 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.97 |
Structure conservation index | 0.66 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.969842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6348955 102 - 22224390 UAACGGCGCACCUCGACUCCGACUCCUAGACGA------------AGUCGCAGUCU------CAGUGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUUAUA (((((((((((...((((.(((((.(.....).------------))))).)))).------..))))..........(((((.((((((.........)))))).)))))))))))).. ( -33.90) >DroSec_CAF1 33202 100 - 1 UAACGGC--ACCUCGA------CUCCUAGACGA------------AGUCGCAGUCGCAGUCGCAGAGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUAUAUUUACGUGGCUGUUAUA (((((((--...((((------(((...((((.------------...)((....)).)))...))))))).......(((((.((((((.........)))))).)))))))))))).. ( -32.70) >DroEre_CAF1 31002 112 - 1 UAACGGC--ACCUCGA------CUCCUAGACGAACUCAUAGUCGUAGUCGUAGUCGCAGUCGCAGAGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUUAUA (((((((--...((((------(((((((((..((........)).))).)))..((....)).))))))).......(((((.((((((.........)))))).)))))))))))).. ( -34.90) >consensus UAACGGC__ACCUCGA______CUCCUAGACGA____________AGUCGCAGUCGCAGUCGCAGAGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUUAUA (((((((.......................................((((.(.((.........)).)))))......(((((.((((((.........)))))).)))))))))))).. (-22.35 = -22.47 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:05 2006