| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,346,440 – 6,346,550 |
| Length | 110 |
| Max. P | 0.539481 |
| Location | 6,346,440 – 6,346,550 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 89.34 |
| Mean single sequence MFE | -31.23 |
| Consensus MFE | -20.76 |
| Energy contribution | -21.32 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539481 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6346440 110 + 22224390 CAGUGACAGGCAACUGACAACCGGCGCAAUAUAAUUUACAACGACGCUG-GCCGUUGACCAGCGGAAAAGCGCAAGUUUUCCACCACCAC-AACUACACGCGAUUACACCGU ..(((.(((....)))........(((..................((((-(.......)))))((((((.(....)))))))........-........)))....)))... ( -28.40) >DroSec_CAF1 30797 111 + 1 CAGUGACAGGCAACUGACACCCGGCGCAAUAUAAUUUACAACGACGCUG-GCCGUUGACCAGCGGAAAAGCGCAAAUUUUCCACCACCAGAAACUUCACGCGAUUACACCGG ..(((.(((....))).)))((((.(.(((..............(((((-(.......)))))).....(((..((.((((........)))).))..))).))).).)))) ( -30.00) >DroEre_CAF1 28637 110 + 1 CAGUGACAGGCAACUGACACCCGGCGCAAUAUAAUUAACAAGGACGGUG-UUCGCUGACCAGCGGAAAAGCGCAAGUUUUCCACCACAUA-AACUUUACGCGCAUACACCGU ..(((.(((....))).))).......................((((((-((((((....))))))...((((((((((..........)-)))))...))))...)))))) ( -32.10) >DroYak_CAF1 27424 111 + 1 CAGUGACAGGCAACUGACACCCGGCGCAAUAUAAUUAACAACGAUGGUGGCCCGCUGACCAGCGGAAAAGCGUAAGUUUUCCACCACAUA-AACUUCACGCGAAUACACCGG ..(((.(((....))).)))(((((((..((....)).....(.((((((.(((((....))))).(((((....))))))))))))...-........)))......)))) ( -34.40) >consensus CAGUGACAGGCAACUGACACCCGGCGCAAUAUAAUUAACAACGACGCUG_GCCGCUGACCAGCGGAAAAGCGCAAGUUUUCCACCACAAA_AACUUCACGCGAAUACACCGG ..(((.(((....))).))).((((((........................(((((....))))).(((((....)))))...................)))......))). (-20.76 = -21.32 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:04 2006