Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,343,762 – 6,343,863 |
Length | 101 |
Max. P | 0.594576 |
Location | 6,343,762 – 6,343,863 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 80.56 |
Mean single sequence MFE | -36.31 |
Consensus MFE | -23.06 |
Energy contribution | -22.50 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.18 |
Mean z-score | -1.74 |
Structure conservation index | 0.64 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6343762 101 + 22224390 CGACCGCUUCCAAUUGCGGUAUUUGCGUGCCUGCAGCUUCUUGUGGAGAAGUUGCGAG----GAAACUCAGUGGC-CAAAGGAAUGGAAAGGGUC--GAGAGAUU----------UGU (((((..(((((...(((.....)))(.(((.((((((((((...))))))))))(((----....)))...)))-).......)))))..))))--).......----------... ( -39.40) >DroSec_CAF1 28204 111 + 1 CGACCGCUUCCAAUUGCGGUAUUUGCGUGCCUGCAGCGUCUUAGGUAGAAGUUGCGAG----GAAACUCAUUGGCCCAAAGGAAUGGAAAGGG-C--GGGAGAUUGGGGAGAAAGUGU (..((.(((((......(((((....))))).(((((.(((.....))).)))))(((----....)))....((((.............)))-)--)))))....))..)....... ( -34.52) >DroEre_CAF1 26057 114 + 1 CGGCCGCUUCCAAUUGCGGUAUUUGCGUGCCUCUAGCUUCUUAGAGAGGAGUUGGGAGUACUGGGAGUCACUGGC-AAAAGAAGUGGAAAGGG-C--GUGAGAUUGGUGAGAAAUUGG ...(((((((...(((((((((((.(((((..((((((((((...))))))))))..)))).).)))).))).))-))..)))))))......-(--....)................ ( -36.00) >DroYak_CAF1 24874 112 + 1 CGACCGCUUCCAAUUGCGGUAUUUGCGUGCCUCUAACUUCUUAGGGAGCAGUUGGGAG----GAGACUCAAUGGC-CAAAGUAGUGGAAAGGG-CUAGAGAGAUUGGGGAGAAAGUGG (..((.((((((((((((((((....)))))(((((....)))))..)))))))))))----....(((..((((-(..............))-)))..)))....))..)....... ( -35.34) >consensus CGACCGCUUCCAAUUGCGGUAUUUGCGUGCCUCCAGCUUCUUAGGGAGAAGUUGCGAG____GAAACUCAAUGGC_CAAAGGAAUGGAAAGGG_C__GAGAGAUUGGGGAGAAAGUGG ...((..(((((.....(((((....)))))((((((((((.....))))))))))............................))))).)).......................... (-23.06 = -22.50 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:00 2006