Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,334,931 – 6,335,038 |
Length | 107 |
Max. P | 0.505165 |
Location | 6,334,931 – 6,335,038 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 87.22 |
Mean single sequence MFE | -26.32 |
Consensus MFE | -19.85 |
Energy contribution | -19.85 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.75 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505165 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6334931 107 + 22224390 CAUCCAGUUCCUCCUCCUCCAGCA------CAUCCUCUC------CUGAAUGGAGCAACAACAAUGGAUGGCCAAAACCGCACAGAAAGCAAUUGGGAAAUGGCAGAAAAACUGGAGCA ..(((((((..((..(((((.((.------(((((.(((------(.....))))..........))))))).......((.......)).....)))...))..))..)))))))... ( -28.20) >DroSec_CAF1 19423 104 + 1 CAUCCAGUUCCU---CCUCCAGCA------CAUCCUCUC------CUGAAUGGAGCAACAACAAUGGAUGGCCAAAACCGCACAGAAAGCAAUUGGGAAAUGGCACAAAAACUGGAGCA ..(((((((((.---..(((.((.------(((((.(((------(.....))))..........))))))).......((.......)).....)))...))......)))))))... ( -25.90) >DroEre_CAF1 17076 102 + 1 CAUCCAGUUCCU---CCUCCAGCAUCCUCGC--------------GUGAAUGGAGCAACAACAAUGGAUGGCCAAAACCGCACAGAAAGCAAUUGGGAAAUGGCACAAAAACUGGAGCA ..(((((((.((---((..((((......))--------------.))...)))).............((((((...((((.......))....))....)))).))..)))))))... ( -23.10) >DroYak_CAF1 15844 116 + 1 CAUCCAGUUCCU---CCUCCAGCAUCCUCGCAGCCUCUCGUGAAUGGGAAUGGAGCAACAACAAUGGAUGGCCAAAACCGCACAGAAAGCAAUUGGGAAAUGGCACAAAAACUGGAGCA ..(((((((...---.(((((...(((((((........))))...))).))))).............((((((...((((.......))....))....)))).))..)))))))... ( -28.10) >consensus CAUCCAGUUCCU___CCUCCAGCA______CAUCCUCUC______CUGAAUGGAGCAACAACAAUGGAUGGCCAAAACCGCACAGAAAGCAAUUGGGAAAUGGCACAAAAACUGGAGCA ..(((((((.......(((((.............................)))))...............((((...((((.......))....))....)))).....)))))))... (-19.85 = -19.85 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:58 2006