Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,331,457 – 6,331,550 |
Length | 93 |
Max. P | 0.928973 |
Location | 6,331,457 – 6,331,550 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 77.83 |
Mean single sequence MFE | -25.30 |
Consensus MFE | -19.44 |
Energy contribution | -19.44 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.78 |
Structure conservation index | 0.77 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928973 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6331457 93 - 22224390 UCACCUAAUUAGCAUUGAGGGCGGGUCGCCAAAAAUGCAAGCC-AAGCCA------UGGCCAAAAACAGGCCUUACACUGU------------AAC--UGAAA----GUGGUAGGUGG .(((((.....(((((...((((...))))...))))).....-..((((------(((((.......))))((((...))------------)).--.....----)))))))))). ( -30.50) >DroSec_CAF1 16069 86 - 1 UCACCUAAUUAGCAUUGAGGGCGGGUCGCCAAAAAUGCAAGCC-AAGCCA------UGGCCAAAAACAGGCCGUACACUGA------------AAC--UGGAA----GUGG------- ...........(((((...((((...))))...))))).....-.....(------(((((.......)))))).((((..------------...--....)----))).------- ( -24.40) >DroSim_CAF1 9735 98 - 1 UCACCUAAUUAGCAUUGAGGGCGGGUCGCCAAAAAUGCAAGCC-AAGCCA------UGGCCGAAAACAGGCCGUACACUGAAAAUGGAACUGAAAC--UGGAA----GUGG------- ...........(((((...((((...))))...)))))...((-(..(((------(((((.......))))))...((......)).........--.))..----.)))------- ( -26.10) >DroEre_CAF1 13686 83 - 1 UCACCUAAUUAGCAUUGAGGGCGGGUCGCCAAAAAUGCAAGCC-AAGCCAAGCGAUUGGCCAAAAACAGGCCUCGAACUGG------------AAC---------------------- ...........(((((...((((...))))...))))).....-...(((..(((..((((.......)))))))...)))------------...---------------------- ( -24.20) >DroYak_CAF1 12370 93 - 1 UCACCUAAUUAGCAUUGAGGGCGGGUCGCCAAAAAUGCAAGCCCAAAUCA------UGGCCAAAAGCAGGCCUGACACUGA------------AACACUGUAACACUGUAA------- (((........(((((...((((...))))...))))).........(((------.((((.......)))))))...)))------------..................------- ( -21.30) >consensus UCACCUAAUUAGCAUUGAGGGCGGGUCGCCAAAAAUGCAAGCC_AAGCCA______UGGCCAAAAACAGGCCUUACACUGA____________AAC__UGGAA____GUGG_______ ...........(((((...((((...))))...)))))...................((((.......)))).............................................. (-19.44 = -19.44 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:56 2006