Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,329,367 – 6,329,468 |
Length | 101 |
Max. P | 0.515312 |
Location | 6,329,367 – 6,329,468 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 80.79 |
Mean single sequence MFE | -31.73 |
Consensus MFE | -25.24 |
Energy contribution | -25.13 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.19 |
Mean z-score | -1.08 |
Structure conservation index | 0.80 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6329367 101 + 22224390 AUAUUUCUAGCAAACAAAUAAUAUAAUUCACCUGGAUCGUAUCUCCGCGUUGGCCAGUUCGGUGCGGGGAUAUGGCUUAGAAGCGGCCACAGCGGUUUCUA ........(((..............((((....))))((((((((((((..((.....))..)))))))))))))))(((((((.((....)).))))))) ( -32.90) >DroVir_CAF1 16330 100 + 1 CGAUUUCAUUCCA-AGACAACUGUAACGCACCUGGAACGUAUCUCGGCAUUGGCCAGCUCGGUGCGCGGAUAUGGCUUAGACGCGGCCACAGCUGUUUCCA .............-(((((.((((..(((..((((..((((((.(((((((((....).)))))).))))))))..))))..)))...)))).)))))... ( -31.90) >DroPse_CAF1 11628 97 + 1 U---AUC-AAUGAGCAACGAUUGAGACUUGCCUGGACCGUAUCUCAGCGUUGGCCAAUUCAGUGCGGGGAUAUGGCUUGGAGGCGGCCACAGCGGUUUCCA .---.((-(((........))))).........((.(((((((((.(((((((.....))))))).)))))))))))(((((((.((....)).))))))) ( -31.40) >DroSec_CAF1 14033 101 + 1 AAAGAUCAAGCGAGAAAGUAAUAUAAUUCACCUGGAUCGUAUCUCGGCGUUGGCCAAUUCGGUGCGGGGAUAUGGCUUGGAGGCGGCCACAGCGGUUUCCA .......((((..............((((....))))((((((((.(((..((.....))..))).))))))))))))((((((.((....)).)))))). ( -31.70) >DroSim_CAF1 7445 101 + 1 AAUGAUCAAACGAGAAAGUAAUAUAAUUCACCUGGAUCGUAUCUCGGCGUUGGCCAAUUCGGUGCGGGGAUAUGGCUUGGAGGCGGCCACAGCGGUUUCCA ...............((((......((((....))))((((((((.(((..((.....))..))).))))))))))))((((((.((....)).)))))). ( -29.70) >DroYak_CAF1 10218 100 + 1 AAAGCUGAAACAAGUAAUUAAUAU-CUGUACCUGGAUCGUAUCUCGGCGUUGGCUAGUUCGGUGCGGGGAUAUGGCUUGGAAGCGGCCACAGCGGUUUCCA .(((((((..((.(((........-...))).))..))(((((((.(((..((.....))..))).))))))))))))((((((.((....)).)))))). ( -32.80) >consensus AAAGAUCAAACGAGAAACUAAUAUAAUUCACCUGGAUCGUAUCUCGGCGUUGGCCAAUUCGGUGCGGGGAUAUGGCUUGGAGGCGGCCACAGCGGUUUCCA .................................((.(((((((((.(((((((.....))))))).)))))))))))(((((((.((....)).))))))) (-25.24 = -25.13 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:53 2006