Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 816,421 – 816,541 |
Length | 120 |
Max. P | 0.999477 |
Location | 816,421 – 816,541 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.67 |
Mean single sequence MFE | -29.52 |
Consensus MFE | -23.54 |
Energy contribution | -24.50 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.09 |
Mean z-score | -2.43 |
Structure conservation index | 0.80 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.983144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 816421 120 + 22224390 AUUUUUUCAAUGAAACUGCUCCAUUGGCUGGAAUAAAUGACAAUCAUUCUGGUUUUCGAGUUCCGAAGAACUGCUCAAAAUAAUUGUUAAUUUAUAAUUGACGAUUACCAGCCAAGCGGU ..............((((((....(((((((......(((.((((.....)))).)))(((((....)))))........(((((((((((.....)))))))))))))))))))))))) ( -33.10) >DroSec_CAF1 17639 118 + 1 --CAUUUCAAUGAAACUGCUCCAUUGGCUGGAAUAAAUGGCAAUCAUUCUGGUUUCCGAGUUCCGAAGAACUGCACAAAAUAAUUGUUCAUUUAUAAUUGACGAUUACCAGCCAAGCGGU --............((((((....(((((((......(((.((((.....)))).)))(((((....)))))........(((((((.((........)))))))))))))))))))))) ( -31.80) >DroSim_CAF1 13935 120 + 1 AUUUUUUCAAUGAAACUGCUCCAUUGGCUGGAAUAAAUGACAAUCAUUCUGGUUUCCGAGUUCCGAAGAACUGCACAAAAUAAUUGUUCAUUUAUAAUUGACGAUUACCAGCCAAGCGGU ..............((((((....(((((((..(((((((((((.(((.((((.....(((((....))))))).)).))).)))).)))))))(((((...)))))))))))))))))) ( -30.70) >DroEre_CAF1 17340 120 + 1 AUUUUUUCAUUGAAACUGCCACAUUCGCUGGCAUAAAUGACAAUCAUUCUGGUUUUCGAGUUCCAGAAAGCUGCACAAAAUAAUUGUCCAUUUAUAAUUGACGAUUACCAGCCAAGCGAA .......................(((((((((...((((.....)))).((((..(((.((..(((....))).))....(((((((......))))))).)))..))))))).)))))) ( -25.60) >DroYak_CAF1 14280 120 + 1 AUUUUUUCAUUGAAACUGCAACAUUGGCUGGGAUAAAUGACAAUCACUCUGGUUUCCGAGUUCCAGAAAGCUGCACACAAUAAUUGUCCAUUUAUAAUUGACGAUUACCAGCCAAGCGAU ................(((....((((((((................(((((..........))))).............((((((((.((.....)).))))))))))))))))))).. ( -26.40) >consensus AUUUUUUCAAUGAAACUGCUCCAUUGGCUGGAAUAAAUGACAAUCAUUCUGGUUUCCGAGUUCCGAAGAACUGCACAAAAUAAUUGUUCAUUUAUAAUUGACGAUUACCAGCCAAGCGGU ..............(((((....((((((((......(((.((((.....)))).)))(((((....)))))........((((((((.((.....)).))))))))))))))))))))) (-23.54 = -24.50 + 0.96)
Location | 816,421 – 816,541 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.67 |
Mean single sequence MFE | -34.67 |
Consensus MFE | -28.94 |
Energy contribution | -29.82 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.08 |
Mean z-score | -3.30 |
Structure conservation index | 0.83 |
SVM decision value | 3.64 |
SVM RNA-class probability | 0.999477 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 816421 120 - 22224390 ACCGCUUGGCUGGUAAUCGUCAAUUAUAAAUUAACAAUUAUUUUGAGCAGUUCUUCGGAACUCGAAAACCAGAAUGAUUGUCAUUUAUUCCAGCCAAUGGAGCAGUUUCAUUGAAAAAAU .(((.((((((((............((((((..((((((((((((..((((((....))))).).....)))))))))))).)))))).))))))))))).................... ( -34.42) >DroSec_CAF1 17639 118 - 1 ACCGCUUGGCUGGUAAUCGUCAAUUAUAAAUGAACAAUUAUUUUGUGCAGUUCUUCGGAACUCGGAAACCAGAAUGAUUGCCAUUUAUUCCAGCCAAUGGAGCAGUUUCAUUGAAAUG-- .(((.((((((((............(((((((..(((((((((((.(.(((((....))))))(....)))))))))))).))))))).)))))))))))....(((((...))))).-- ( -38.22) >DroSim_CAF1 13935 120 - 1 ACCGCUUGGCUGGUAAUCGUCAAUUAUAAAUGAACAAUUAUUUUGUGCAGUUCUUCGGAACUCGGAAACCAGAAUGAUUGUCAUUUAUUCCAGCCAAUGGAGCAGUUUCAUUGAAAAAAU .(((.((((((((............((((((((.(((((((((((.(.(((((....))))))(....)))))))))))))))))))).))))))))))).................... ( -40.92) >DroEre_CAF1 17340 120 - 1 UUCGCUUGGCUGGUAAUCGUCAAUUAUAAAUGGACAAUUAUUUUGUGCAGCUUUCUGGAACUCGAAAACCAGAAUGAUUGUCAUUUAUGCCAGCGAAUGUGGCAGUUUCAAUGAAAAAAU .((((((.(((((((...(.(((((((...((.((((.....)))).))....(((((..........)))))))))))).).....))))))).)).)))).................. ( -29.70) >DroYak_CAF1 14280 120 - 1 AUCGCUUGGCUGGUAAUCGUCAAUUAUAAAUGGACAAUUAUUGUGUGCAGCUUUCUGGAACUCGGAAACCAGAGUGAUUGUCAUUUAUCCCAGCCAAUGUUGCAGUUUCAAUGAAAAAAU ...((((((((((((((.....))))((((((.(((((((((.((.(....((((((.....))))))))).)))))))))))))))..))))))))....))................. ( -30.10) >consensus ACCGCUUGGCUGGUAAUCGUCAAUUAUAAAUGAACAAUUAUUUUGUGCAGUUCUUCGGAACUCGGAAACCAGAAUGAUUGUCAUUUAUUCCAGCCAAUGGAGCAGUUUCAUUGAAAAAAU ...((((((((((............(((((((.((((((((((((.(.(((((....))))))(....)))))))))))))))))))).)))))))....)))................. (-28.94 = -29.82 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:40 2006