Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,325,281 – 6,325,373 |
Length | 92 |
Max. P | 0.962935 |
Location | 6,325,281 – 6,325,373 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.17 |
Mean single sequence MFE | -33.18 |
Consensus MFE | -21.93 |
Energy contribution | -22.23 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.08 |
Mean z-score | -2.57 |
Structure conservation index | 0.66 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.962935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6325281 92 + 22224390 GAACGGUU-----------------------CUUUAU-----CCGCAUUGCACAGCCAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACGAAGCCAUUACACGGAUGGUAAUAGUU ...(((..-----------------------......-----))).(((((.(((((((((........)))))))..((((.((((((.......)))))).).))).))))))).... ( -27.60) >DroPse_CAF1 7249 120 + 1 GAACGCAUACGGAAACUGGCACUCGUGCGGGCACUCUCUGCCCUGCAGUGCCAUGCAAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACAAAGCCAUUACACGGAUGGCAAUAGUU ....((((..(....).((((((.(((.(((((.....))))))))))))))))))..((((.....)))).((.((.((((.((((((.......)))))).).))).)).))...... ( -42.80) >DroSec_CAF1 10057 91 + 1 GAACGGUU-----------------------CUUUCU-----CCGCAUUGCACAGCCAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACGAAGCCAUU-CACGGAUGGUAAUAGUU ...(((..-----------------------......-----))).(((((.(((((((((........)))))))..(((..((((((.......))))))-..))).))))))).... ( -29.50) >DroEre_CAF1 7648 92 + 1 GAACGGUU-----------------------CUUUCU-----CCGCAUUGCACAGCCAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACGAAGCCAUUACACGGAUGGUAAUAGUU ...(((..-----------------------......-----))).(((((.(((((((((........)))))))..((((.((((((.......)))))).).))).))))))).... ( -27.60) >DroYak_CAF1 6119 92 + 1 GAACGGUU-----------------------CUUUCU-----CCGCAUUGCACAGCCAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACGAAGCCAUUACACGGAUGGUAAUAGUU ...(((..-----------------------......-----))).(((((.(((((((((........)))))))..((((.((((((.......)))))).).))).))))))).... ( -27.60) >DroPer_CAF1 7412 120 + 1 GAACGCAUACGGAAACUGGCACUCGUGCGGGCACUCUCUGCCCUGCAGUGCCAUGCAAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACAAAGCCAUUACAUGGAUUGCAAUAGUU .(((((((..(....).((((((.(((.(((((.....))))))))))))))))))...((((((((((.((((((...(....)((.....))..))))))...))))))))))..))) ( -44.00) >consensus GAACGGUU_______________________CUUUCU_____CCGCAUUGCACAGCCAUUUGUAAUUCAAAAUGGCAACCGGAAGUGGCAGACGAAGCCAUUACACGGAUGGUAAUAGUU ............................................(((((((...(((((((........)))))))..((((.((((((.......)))))).).)))...))))).)). (-21.93 = -22.23 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:49 2006