Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,304,315 – 6,304,405 |
Length | 90 |
Max. P | 0.981610 |
Location | 6,304,315 – 6,304,405 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 74.81 |
Mean single sequence MFE | -28.30 |
Consensus MFE | -17.07 |
Energy contribution | -18.93 |
Covariance contribution | 1.87 |
Combinations/Pair | 1.13 |
Mean z-score | -2.18 |
Structure conservation index | 0.60 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981610 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6304315 90 + 22224390 AAUGGGCACAACCUGCGGCUAAGGGAUUUCGCCCAGGAUCUCGUCUGCAGGGUCUCCAAUGCAAUAUCAACCAGUUGCAUGCUGCCCCUC ...((((((..(((((((....(((((((......)))))))..))))))).......(((((((........)))))))).)))))... ( -32.80) >DroSec_CAF1 36735 90 + 1 AAUGGGCAAAAGCUGCGGCUAAGGGACUUCGCCCAGGACCUCAUCUGCAGGGUCUCCAAUGCAAUCUCAACCAGUUGCAUGCUGCCCCUC ...(((((...(((((((((..(((......))).((((((........)))))).................))))))).)))))))... ( -29.80) >DroSim_CAF1 34385 90 + 1 AAUGGGCGAAAUCUGCGGCCAAGGGACUUCGCCCAGGACCUCAUCUGCAGGGUCUCCAAUGCAANNNNNNNNNNNNNNNNNNNNNNNNNN ..((((((((.(((.(......)))).))))))))((((((........))))))................................... ( -22.30) >consensus AAUGGGCAAAACCUGCGGCUAAGGGACUUCGCCCAGGACCUCAUCUGCAGGGUCUCCAAUGCAAU_UCAACCAGUUGCAUGCUGCCCCUC ..((((.....(((((((...(((..((......))..)))...)))))))...))))(((((((........))))))).......... (-17.07 = -18.93 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:48 2006