Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,303,467 – 6,303,560 |
Length | 93 |
Max. P | 0.917348 |
Location | 6,303,467 – 6,303,560 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 90.43 |
Mean single sequence MFE | -20.52 |
Consensus MFE | -17.85 |
Energy contribution | -17.10 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.17 |
Mean z-score | -1.95 |
Structure conservation index | 0.87 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917348 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6303467 93 - 22224390 -------CUCUCUCUCUGUUGCCAUCAUCUAUCUGUCUCGCUCGCUUUGUUCGUCAGCAGAUUUUGGAUGCUGCAACAUCUUUGGUUACACUCAAAAUGA -------.........((((((...((((((...((((.(((.((.......)).)))))))..))))))..))))))..(((((......))))).... ( -21.70) >DroSec_CAF1 35916 88 - 1 -------CUCU--CUCUGUUGCAA---UCUAUCUGUCUCGCUCGCUUUGUUCGUCAGCAGAUUUUGGAUGCUGCAACAUCUUUGGUUACACUCAAAAUGA -------....--...((((((((---((((...((((.(((.((.......)).)))))))..)))))..)))))))..(((((......))))).... ( -20.20) >DroSim_CAF1 33521 88 - 1 -------CUCU--CUCUGUUGCCA---UCUAUCUGUCUCGCUCGCUUUGUUCGUCAGCAGAUUUUGGAUGCUGCAACAUCUUUGGUUACACUCAAAAUGA -------....--...((((((((---((((...((((.(((.((.......)).)))))))..))))))..))))))..(((((......))))).... ( -21.20) >DroYak_CAF1 33021 95 - 1 UCUCUCUCUCU--CUCUGUUGUCA---UCUAUCUAUCUCGCUCGCUUUGUUCGUCAGCAGGUUUUGGAUGUUGCAGCAUCUUUGGUUACACUCAAAAUGA ...........--..((((...((---((((...((((.(((.((.......)).)))))))..))))))..))))(((.(((((......)))))))). ( -19.00) >consensus _______CUCU__CUCUGUUGCCA___UCUAUCUGUCUCGCUCGCUUUGUUCGUCAGCAGAUUUUGGAUGCUGCAACAUCUUUGGUUACACUCAAAAUGA ................((((((.....((((...((((.(((.((.......)).)))))))..))))....))))))..(((((......))))).... (-17.85 = -17.10 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:47 2006