Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,302,975 – 6,303,072 |
Length | 97 |
Max. P | 0.972015 |
Location | 6,302,975 – 6,303,072 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 90.79 |
Mean single sequence MFE | -23.77 |
Consensus MFE | -19.58 |
Energy contribution | -20.45 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.08 |
Mean z-score | -2.74 |
Structure conservation index | 0.82 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6302975 97 + 22224390 CAUGUAUCUGCAUCUGCAGCUGCA------ACUGUAUCUGAAUCUUUGUGGCAUCUUUUGUAUCGCAAAGAUUUGUUUACUCCUCGCUACGACUUUUGUUUUG ..((((.((((....)))).))))------...(((..(((((((((((((((.....)))..))))))))))))..)))....................... ( -24.30) >DroSec_CAF1 35420 92 + 1 CA----UCUGCAUCUGCAGCUGCA------ACUGUAUCUGAAUCUUUGUGGCAUCUUUUGUAUCGCAAAGAUUUGUUUACUCCUCACU-CGACUUUUGUUUUG ((----.((((....)))).))..------...(((..(((((((((((((((.....)))..))))))))))))..)))........-.............. ( -20.60) >DroSim_CAF1 33029 96 + 1 CAUGUAUCUGCAUCUGCAGCUGCA------ACUGUAUCUGAAUCUUUGUGGCAUCUUUUGUAUCGCAAAGAUUUGUUUACUCCUCACU-CGACUUUUGUUUUG ..((((.((((....)))).))))------...(((..(((((((((((((((.....)))..))))))))))))..)))........-.............. ( -24.30) >DroYak_CAF1 32600 102 + 1 CAUGUAUCUGCAUCUGCAUCUGCAUUUGAAUCUGUAUCUGAAUCUUUGUGGCGUCUUUUAUGUCGCAAAGAUUUGUUUACUCCACGCU-CGACUUUUGUUUUG .(((((..(((....)))..)))))........(((..((((((((((((((((.....))))))))))))))))..)))........-.............. ( -25.90) >consensus CAUGUAUCUGCAUCUGCAGCUGCA______ACUGUAUCUGAAUCUUUGUGGCAUCUUUUGUAUCGCAAAGAUUUGUUUACUCCUCACU_CGACUUUUGUUUUG ..((((.((((....)))).)))).........(((..((((((((((((..((.....))..))))))))))))..)))....................... (-19.58 = -20.45 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:46 2006