| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,301,880 – 6,301,982 |
| Length | 102 |
| Max. P | 0.991356 |
| Location | 6,301,880 – 6,301,982 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 71.41 |
| Mean single sequence MFE | -26.40 |
| Consensus MFE | -15.00 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.57 |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.991356 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6301880 102 + 22224390 ----------------CCGAUCCGAUCCCUUUCCCUACCCGCAAAGGUUUUUGGUGGAAAUAAAAGCAAUUACGGCCAUCAAUUGGCCAUGUUGCAUAAAAAUGAAUAGCCAUAAAAU ----------------(((..((((..(((((.(......).)))))...)))))))........(((((...(((((.....)))))..)))))....................... ( -22.80) >DroPse_CAF1 20711 107 + 1 CUGGCUCUGGCUCUGGCUGUGGCUCUGCCCCUCG----CUCCGCA-------GUGGGAAAUAAAAGCAAUUACGGCCAUCAAUUGGCCAUGUUGCAUAAAAAUGAAUAACCAUAAAAU .......(((.(((.(((((((....((.....)----).)))))-------)).))).......(((((...(((((.....)))))..)))))..............)))...... ( -32.20) >DroPer_CAF1 22589 101 + 1 CUGGCU------CUGGCUGUGGCUCUGCCUCUCG----CUCCGCA-------GUGGAAAAUAAAAGCAAUUACGGCCAUCAAUUGGCCAUGUUGCAUAAAAAUGAAUAACCAUAAAAU .(((..------.(.(((((((....((.....)----).)))))-------)).).........(((((...(((((.....)))))..)))))..............)))...... ( -27.70) >DroYak_CAF1 31548 88 + 1 --------------------------CCCCUUCG----CAUCGAAAGUUUUUGGAGGAAAUAAAAGCAAUUACGGCCAUCAAUUGGCCAUGUUGCAUAAAAAUGAAUAGCCAUAAAAU --------------------------..((((((----...(....)....))))))........(((((...(((((.....)))))..)))))....................... ( -22.90) >consensus ________________CUGUGGCUCUCCCCCUCG____CUCCGAA_______GGGGGAAAUAAAAGCAAUUACGGCCAUCAAUUGGCCAUGUUGCAUAAAAAUGAAUAACCAUAAAAU .................................................................(((((...(((((.....)))))..)))))....................... (-15.00 = -15.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:44 2006