Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,289,298 – 6,289,395 |
Length | 97 |
Max. P | 0.708315 |
Location | 6,289,298 – 6,289,395 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.22 |
Mean single sequence MFE | -33.05 |
Consensus MFE | -16.62 |
Energy contribution | -17.50 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -2.53 |
Structure conservation index | 0.50 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6289298 97 + 22224390 AAAUUGAAAUGGGAACAGCGUUUACCGGCGAAAAUGGAAAUCGCCGCAAGGUGACUUGGAUUUUGGGGU---GGUUGCUCCAUGCCG--------------------AAAAGGAAUUUUG ....((((.((....))...))))(((((((.........))))).((((....))))..((((((.((---((.....)))).)))--------------------))).))....... ( -29.60) >DroSec_CAF1 26436 95 + 1 AAAUUGAAAUGGUAGCAGCGUUUACCGCCGA-AAUGGAAAUCGCCGCAAGGUGACUUGGAUUUUG-GGU---GGUUGCUCCACGUCG--------------------AAAAGGAAUUUGG ...((((..(((.((((......((((((((-(((..((.(((((....))))).))..))))).-)))---))))))))))..)))--------------------)............ ( -32.00) >DroSim_CAF1 24384 95 + 1 AAAUUGAAAUGGUAGCAGCGUUUACCGGCGA-AAUGGAAAUCGCCGCAAGGUGACUUGGAUUUUG-GGU---GGUUGCUCCACGUCG--------------------AAAAGGAAUUUGG ...((((..(((.((((((...(((((((((-........))))).((((....)))).......-)))---))))))))))..)))--------------------)............ ( -33.60) >DroYak_CAF1 23923 119 + 1 AAAUUGAAAUGGGAACAGCGUUUACCAGCGA-AAUGAAAAUCGCCGCAAGGUGACUCGGAGUUUGGCGUCUGGGCUGCUGGACGGGGCAGAUGGCUGGGUUUAUUGCGAAAGGAAUUUGG ...(((.((((((..((((((((.((.((.(-(((.....(((((....)))))......)))).))(((..(....)..)))..)).)))).))))..)))))).)))........... ( -37.00) >consensus AAAUUGAAAUGGGAACAGCGUUUACCGGCGA_AAUGGAAAUCGCCGCAAGGUGACUUGGAUUUUG_GGU___GGUUGCUCCACGUCG____________________AAAAGGAAUUUGG .........(((.((((((.....(((.......)))...(((((....)))))...................)))))))))...................................... (-16.62 = -17.50 + 0.88)
Location | 6,289,298 – 6,289,395 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.22 |
Mean single sequence MFE | -20.82 |
Consensus MFE | -14.69 |
Energy contribution | -15.00 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.25 |
Mean z-score | -1.67 |
Structure conservation index | 0.71 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6289298 97 - 22224390 CAAAAUUCCUUUU--------------------CGGCAUGGAGCAACC---ACCCCAAAAUCCAAGUCACCUUGCGGCGAUUUCCAUUUUCGCCGGUAAACGCUGUUCCCAUUUCAAUUU .............--------------------.((.((((((((...---...........((((....))))((((((.........))))))........)))).)))).))..... ( -19.20) >DroSec_CAF1 26436 95 - 1 CCAAAUUCCUUUU--------------------CGACGUGGAGCAACC---ACC-CAAAAUCCAAGUCACCUUGCGGCGAUUUCCAUU-UCGGCGGUAAACGCUGCUACCAUUUCAAUUU .............--------------------.((.(((((((((((---.((-..((((..(((((.((....)).)))))..)))-).)).)))......)))).)))).))..... ( -21.40) >DroSim_CAF1 24384 95 - 1 CCAAAUUCCUUUU--------------------CGACGUGGAGCAACC---ACC-CAAAAUCCAAGUCACCUUGCGGCGAUUUCCAUU-UCGCCGGUAAACGCUGCUACCAUUUCAAUUU .............--------------------.((.((((((((...---...-.......((((....))))((((((........-))))))........)))).)))).))..... ( -23.60) >DroYak_CAF1 23923 119 - 1 CCAAAUUCCUUUCGCAAUAAACCCAGCCAUCUGCCCCGUCCAGCAGCCCAGACGCCAAACUCCGAGUCACCUUGCGGCGAUUUUCAUU-UCGCUGGUAAACGCUGUUCCCAUUUCAAUUU .......................((((....((((.......((((....(((............)))...))))(((((........-)))))))))...))))............... ( -19.10) >consensus CCAAAUUCCUUUU____________________CGACGUGGAGCAACC___ACC_CAAAAUCCAAGUCACCUUGCGGCGAUUUCCAUU_UCGCCGGUAAACGCUGCUACCAUUUCAAUUU ..................................((.((((((((.................((((....))))((((((.........))))))........)))).)))).))..... (-14.69 = -15.00 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:42 2006