Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,288,510 – 6,288,611 |
Length | 101 |
Max. P | 0.555142 |
Location | 6,288,510 – 6,288,611 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 78.00 |
Mean single sequence MFE | -28.02 |
Consensus MFE | -14.56 |
Energy contribution | -15.12 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.30 |
Mean z-score | -2.09 |
Structure conservation index | 0.52 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555142 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6288510 101 - 22224390 UUUAAUGACCUAACCGUUA------UUGUUGCUUUUGCCAGUUGCUUGCUUGCUUGCUGGUUGUUGCUUGUUGUAUGUUGGUUGUAUGCAUGUCGUGCCACCAACAA ..(((((((......))))------)))..((....((((((.((......))..))))))....))........(((((((.(((((.....))))).))))))). ( -30.30) >DroSec_CAF1 25698 96 - 1 UUUAAUGACCUAACCGUUA------UUGUUGCUUUUGCCGGUUGC-----UGCUCGCUGGUUUUUGCUUGUUGUAUGUUGGUUGUAUGCAUGUCGUGCCACCAACAA ..(((((((......))))------)))..((....((((((...-----.....))))))....))........(((((((.(((((.....))))).))))))). ( -26.10) >DroSim_CAF1 23650 96 - 1 UUUAAUGACCUAACCGUUA------UUGUUGCUUUUGCCGGUUGC-----UGCUCGCUGGUUGUUGCUUGUUGUAUGUUGGUUGUAUGCAUGUCGUGCCACCAACAA ..(((((((......))))------)))..((....((((((...-----.....))))))....))........(((((((.(((((.....))))).))))))). ( -26.10) >DroPer_CAF1 13047 91 - 1 UUUAAUGACCCGAACGUUGGUGCUUUUGUUGCUUUUGUCGGCUG--------UACGGUGGUA-----CGGUGGUA---CGGUUGUAUGCAUGUUGUACCGGCAUCAG ...............((((((((...((((((..(((((.((((--------(((....)))-----)))).).)---)))..))).)))....))))))))..... ( -29.60) >consensus UUUAAUGACCUAACCGUUA______UUGUUGCUUUUGCCGGUUGC_____UGCUCGCUGGUUGUUGCUUGUUGUAUGUUGGUUGUAUGCAUGUCGUGCCACCAACAA ..(((((.......)))))...........((....((((((.((......))..))))))....))........(((((((.(((((.....))))).))))))). (-14.56 = -15.12 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:39 2006