Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,286,139 – 6,286,291 |
Length | 152 |
Max. P | 0.973328 |
Location | 6,286,139 – 6,286,251 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -42.57 |
Consensus MFE | -40.71 |
Energy contribution | -41.27 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.63 |
Structure conservation index | 0.96 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6286139 112 - 22224390 AGACGCAGUUCGGCAACGCCAUUGUUACCUGUACAGGUGGACGUGUGUGCGCGCGGACAGAGAUGGCGAUGGUGAAUGCGAUAUUUCAGUGCGUUGUGUGAAAAGCAGCGUA ...((((.((((.((.(((((((...((((....))))(..(((((....)))))..)...))))))).)).)))))))).........((((((((.......)))))))) ( -43.50) >DroSec_CAF1 22905 112 - 1 AGACGCAGUUCGGCAACGCCAUUGUUACCUGUACAGGUGAACGUGUGUGCGCGCGGACAGAGAUGGCGAUGGCGAAUGCGAUAUUUCAGUGCGUUGUGUGAAAAGCAGCGUA ...((((.((((.((.(((((((.((((((....)))))).(((((....)))))......))))))).)).)))))))).........((((((((.......)))))))) ( -45.50) >DroYak_CAF1 20021 112 - 1 AGACGCAGUUCGGCAACGCCAUUGUUACCCGUACAGGUGGACGUGUGUGUGCGCGGACAGAGAUGGCGAAUGCGAAUGCGAUAUUUCAAUGCGUUGUGUGAAAAGCAGCGUA ...((((.((((.((.(((((((.....((.....))((..(((((....)))))..))..)))))))..)))))))))).........((((((((.......)))))))) ( -38.70) >consensus AGACGCAGUUCGGCAACGCCAUUGUUACCUGUACAGGUGGACGUGUGUGCGCGCGGACAGAGAUGGCGAUGGCGAAUGCGAUAUUUCAGUGCGUUGUGUGAAAAGCAGCGUA ...((((.((((.((.(((((((.((((((....)))))).(((((....)))))......))))))).)).)))))))).........((((((((.......)))))))) (-40.71 = -41.27 + 0.56)
Location | 6,286,179 – 6,286,291 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 95.24 |
Mean single sequence MFE | -38.47 |
Consensus MFE | -37.29 |
Energy contribution | -37.40 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.17 |
Structure conservation index | 0.97 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938323 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6286179 112 - 22224390 UCGCGUCGGACGCAAGGAAACAAUAACAAGCGGAAAAAACAGACGCAGUUCGGCAACGCCAUUGUUACCUGUACAGGUGGACGUGUGUGCGCGCGGACAGAGAUGGCGAUGG ....(((((((....(....)........(((...........))).)))))))..(((((((...((((....))))(..(((((....)))))..)...))))))).... ( -39.30) >DroSec_CAF1 22945 112 - 1 UCGCGUCGGACGCAAGGAAACAAUAACAAGCGGAAAAAACAGACGCAGUUCGGCAACGCCAUUGUUACCUGUACAGGUGAACGUGUGUGCGCGCGGACAGAGAUGGCGAUGG ....(((((((....(....)........(((...........))).)))))))..(((((((.((((((....)))))).(((((....)))))......))))))).... ( -39.20) >DroYak_CAF1 20061 112 - 1 UUUCGUCGGACACAAGGAAACAAUAACAAGCGGAAAAAACAGACGCAGUUCGGCAACGCCAUUGUUACCCGUACAGGUGGACGUGUGUGUGCGCGGACAGAGAUGGCGAAUG ....(((((((....(....)........(((...........))).)))))))..(((((((.....((.....))((..(((((....)))))..))..))))))).... ( -36.90) >consensus UCGCGUCGGACGCAAGGAAACAAUAACAAGCGGAAAAAACAGACGCAGUUCGGCAACGCCAUUGUUACCUGUACAGGUGGACGUGUGUGCGCGCGGACAGAGAUGGCGAUGG ....(((((((....(....)........(((...........))).)))))))..(((((((.((((((....)))))).(((((....)))))......))))))).... (-37.29 = -37.40 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:34 2006