Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,273,070 – 6,273,182 |
Length | 112 |
Max. P | 0.996233 |
Location | 6,273,070 – 6,273,182 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 75.16 |
Mean single sequence MFE | -18.47 |
Consensus MFE | -12.75 |
Energy contribution | -13.20 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -2.17 |
Structure conservation index | 0.69 |
SVM decision value | 2.67 |
SVM RNA-class probability | 0.996233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6273070 112 + 22224390 AAAAAAAAGGAACAGAAAACAAAAACAAGCUAAUACAUCAUGGCCAAGUUGCUGUAAUUUACACUAUUAUCAUUCCCAGAUGAACAAAAACAAGCUAUUUCUCAUGAAACUU .......(((((.((...(((..(((..((((........))))...)))..)))..............(((((....)))))...........)).))))).......... ( -10.10) >DroSec_CAF1 15354 92 + 1 --AAA------------------AGCUGGUAAGAACAUCAUGGCCAAGUGGCUGUAAUUAACAGUAUUAUCAUUCCCAGAUGAGCUUAAACCAGCUACUUAUCAUGCAACUU --...------------------((((((((((..((((.(((...(((((((((.....))))).....)))).)))))))..)))..)))))))................ ( -24.10) >DroSim_CAF1 16920 94 + 1 AAAAA------------------AGCUUGUAAAUUCAUCAUGGCCAAGUGGCUGUAAUUAACACUAUAAUCAUUCCCAGAUGAGCUUAAACAAGCUAUUUAUCAUGAAACUU .(((.------------------(((((((((.((((((.(((...((((..((((........))))..)))).))))))))).))..))))))).)))............ ( -21.20) >consensus AAAAA__________________AGCUAGUAAAUACAUCAUGGCCAAGUGGCUGUAAUUAACACUAUUAUCAUUCCCAGAUGAGCUUAAACAAGCUAUUUAUCAUGAAACUU .....................................((((((..((((((((((.....)).......(((((....))))).........)))))))).))))))..... (-12.75 = -13.20 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:25 2006