Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,270,183 – 6,270,287 |
Length | 104 |
Max. P | 0.977315 |
Location | 6,270,183 – 6,270,287 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.51 |
Mean single sequence MFE | -28.06 |
Consensus MFE | -18.55 |
Energy contribution | -18.60 |
Covariance contribution | 0.05 |
Combinations/Pair | 1.14 |
Mean z-score | -2.41 |
Structure conservation index | 0.66 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6270183 104 - 22224390 ----UAUAUAUCCAUUUGAUGAAAGUUAACGCUUGAA------------UUCAAAAACUGGCCCAUAACUAGAGUGGUUGCCUAAGUUUGAGUUUUGGAAACAAUAAUUGCAGCCGGCGA ----...........(((((....)))))((((.(((------------((((((....(((((((.......))))..)))....)))))))))((....))............)))). ( -23.60) >DroSec_CAF1 12414 95 - 1 ----UAUAUAUCCAUUAAAUGAAAGU-GACGCUUGAA------------UUCAAA-ACUGGG-CAUAUCUAGAGUG--UGCCUAGUUUGGAG-UUUGCA-ACAAUAA-UGCAGCA-GCGA ----........((((.......)))-).((((.(((------------(((.((-((((((-(((((.....)))--)))))))))).)))-)))(((-.......-)))...)-))). ( -28.80) >DroSim_CAF1 13716 104 - 1 ----UAUAUAUGCAUUAAAUGAAAGUUAACGCUUGAA------------UUCAAAAACUGGCCCAUAUCUAGAGUGGUUGCCUAAGUUUGAGUUUUGCAAACAAUAAUUGCAGCAGGCGA ----.........................((((((((------------((((((....(((((((.......))))..)))....))))))))((((((.......)))))))))))). ( -25.90) >DroEre_CAF1 1409 120 - 1 GCUUUACAUUUCCAUUAAAUGAAAGUUAACGCCUGAAUUUUUGCCUCCGUUCAAAAACUAGCCCAUAUCUAUAGUGGCUGCUUAAGUUUGAGUUUUGGAAACAAUAAUUGCAGCAGGCGA (((((.(((((.....))))))))))...((((((((((.(((..((((((((((....(((((((.......))))..)))....))))))...))))..))).))))....)))))). ( -29.50) >DroYak_CAF1 9584 120 - 1 ACUUUAUAUUUCCAUUAAAUGAAAGUUAACGCCUGCUUUUUGGCCUCCAUUCAAAAACUAGCCCACAUCUACAGUGGCCGCUUAAGUUUGAGUUUUGGAAACAAUAAUUGCAGCAGGCGA (((((.(((((.....))))))))))...((((((((...........(((((((....(((((((.......))))..)))....))))))).(((....))).......)))))))). ( -32.50) >consensus ____UAUAUAUCCAUUAAAUGAAAGUUAACGCUUGAA____________UUCAAAAACUGGCCCAUAUCUAGAGUGGCUGCCUAAGUUUGAGUUUUGGAAACAAUAAUUGCAGCAGGCGA .............................((((((..............((((((....(((((((.......))))..)))....))))))..(((....))).........)))))). (-18.55 = -18.60 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:17 2006