Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,269,604 – 6,269,709 |
Length | 105 |
Max. P | 0.684261 |
Location | 6,269,604 – 6,269,709 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 65.57 |
Mean single sequence MFE | -24.00 |
Consensus MFE | -13.03 |
Energy contribution | -13.37 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.29 |
Mean z-score | -1.44 |
Structure conservation index | 0.54 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6269604 105 - 22224390 UGGCUGGCCAAAGUCUUUUGCACUGGGAAAAAAACACCAUGUUUAGGAAGCAAGAAUAAGUCACUUACACCGAUUUCAUUCGUCGAAGUUACAACUAAAAACCAC------------ (((((.((.....((((..(((.(((..........))))))..)))).)).)).....((.((((.(..(((......)))..))))).)).........))).------------ ( -17.20) >DroSim_CAF1 13164 95 - 1 UGGCUGGCCAAAGUCUUCUGCACUGGAAAAAAAGUGCCA-GUGUGGGAAGCAAGAAUAAGUCAGUUG----------------CGAAGUUGCAUCUGAAAACCAAUAGAUAG----- (((....)))..(..(((..((((((..........)))-)))..)))..).........((((.((----------------((....)))).))))..............----- ( -27.10) >DroYak_CAF1 8998 101 - 1 UGGCUGGCCAAAGUCUGUUGCACUGGAAAAAAUGU-CGA-GUGCGUGAAGCAAGAAGAAGCCGGCU---------CUAUU-----GAGUUGCAUCUGAAAACUAAUAGAUAUAUUUU ..((((((.....(((((((((((.((.......)-).)-)))))....)).)))....))))))(---------(((((-----.((((.........))))))))))........ ( -27.70) >consensus UGGCUGGCCAAAGUCUUUUGCACUGGAAAAAAAGU_CCA_GUGUGGGAAGCAAGAAUAAGUCAGUU___________AUU___CGAAGUUGCAUCUGAAAACCAAUAGAUA______ (((((.......(..(((((((((((..........))).))))))))..).......)))))...................................................... (-13.03 = -13.37 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:12 2006