Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,267,495 – 6,267,615 |
Length | 120 |
Max. P | 0.957117 |
Location | 6,267,495 – 6,267,615 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -33.10 |
Consensus MFE | -31.95 |
Energy contribution | -32.20 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.84 |
Structure conservation index | 0.97 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.957117 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6267495 120 - 22224390 AAAGUGUCGAAAAUGCGAGUCAAGGCGCCGUUUUUGCAAUUUGUGUGCGACGCGAUGUCAAAAUACAUUGCCAGCUACAAAAACAACAGUAGCAACAGCAACAAAAACCGCACAUGGCAA ....((.((((((((.(.((....)).)))))))))))..(..((((((..(((((((......)))))))..(((((..........)))))...............))))))..)... ( -33.40) >DroSec_CAF1 9682 120 - 1 AAAGUGUCGAAAAUGCGAGUCAAGGCGACGUUUUUGCAAUUUGUGUGCGACGCGAUGUCAAAAUACAUUGCCAGCAACAAAAACAACAGUAGCAACAGCAACAAAAUCCGCACAUGGCAA ....(((((....((((.(((.....)))(((.((((..(((((.(((...(((((((......)))))))..)))))))).((....)).)))).))).........))))..))))). ( -30.60) >DroSim_CAF1 11031 120 - 1 AAAGUGUCGAAAAUGCGAGUCAAGGCGCCGUUUUUGCAAUUUGUGUGCGACGCGAUGUCAAAAUACAUUGCCAGCUACAAAAACAACAGUAGCAACAGCAACAAAAACCGCACAUGGCAA ....((.((((((((.(.((....)).)))))))))))..(..((((((..(((((((......)))))))..(((((..........)))))...............))))))..)... ( -33.40) >DroYak_CAF1 6803 120 - 1 AAAGUGUCGAAAAUGCGAGUCAAGGCGCCGUUUUUGCAAUUUGUGUGCGACGCGAUGUCAAAAUACAUUGCCAGCUACAAAAACAACAGUAGCAACAGCAACACAAACCGCACAUGGCAA ......(((......)))((....))(((((...(((..(((((((((...(((((((......)))))))..(((((..........)))))....)).)))))))..))).))))).. ( -35.00) >consensus AAAGUGUCGAAAAUGCGAGUCAAGGCGCCGUUUUUGCAAUUUGUGUGCGACGCGAUGUCAAAAUACAUUGCCAGCUACAAAAACAACAGUAGCAACAGCAACAAAAACCGCACAUGGCAA ....((((.(((.((((((....(....)...)))))).)))(((((((..(((((((......)))))))..(((((..........)))))...............))))))))))). (-31.95 = -32.20 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:05 2006