Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,267,165 – 6,267,314 |
Length | 149 |
Max. P | 0.864203 |
Location | 6,267,165 – 6,267,284 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 89.36 |
Mean single sequence MFE | -30.14 |
Consensus MFE | -25.75 |
Energy contribution | -25.77 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.18 |
Mean z-score | -1.68 |
Structure conservation index | 0.85 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513798 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6267165 119 - 22224390 AGGGUUUUCUUCUGGGCUUUCUAGAAAAUACCUUCCGACUCACCUAGAAAACUUAAGGAGCUGUAUAAGACGCAGAAACUUUGAAAUAAAUCAUAGGCUUAAAUUGUAGAGUUUGUGAC (((((((.((((((((.(((((((...................))))))).))).)))))((((.......)))))))))))........((((((((((........)))))))))). ( -24.51) >DroSec_CAF1 9351 119 - 1 AGGGUUUUAUUCUGGGCUUUCUAGAAAAUACCUUCCGGCUCACCUAGGAAUCCCUAGGAGUUGUAUAAGACGCUAAAACUUUAAAAUAACUUAUAGUUUUAAAUUGGUGAGCUUGUGAC (((((....((((((.....))))))...))))).(((((..((((((....)))))))))))((((((.((((((...((((((((........))))))))))))))..)))))).. ( -31.70) >DroSim_CAF1 10690 119 - 1 AGGGUUUUAUUCUGGGCUUUCCAGAAAAUACCUUCCGGCUCACCUAGGAAUCCCUAGGAGUUGUAUAAGACGCUGAAACUUUAAAAUAACUUAUAGGUUUAAAUUGGUGAGCUUGUGAC (((((....((((((.....))))))...))))).((((...((((((....)))))).(((......)))))))...............(((((((((((......))))))))))). ( -34.20) >consensus AGGGUUUUAUUCUGGGCUUUCUAGAAAAUACCUUCCGGCUCACCUAGGAAUCCCUAGGAGUUGUAUAAGACGCUGAAACUUUAAAAUAACUUAUAGGUUUAAAUUGGUGAGCUUGUGAC (((((((((((((((.....)))))).....(((.(((((..((((((....)))))))))))...)))....)))))))))........(((((((((((......))))))))))). (-25.75 = -25.77 + 0.01)
Location | 6,267,204 – 6,267,314 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.00 |
Mean single sequence MFE | -29.77 |
Consensus MFE | -25.34 |
Energy contribution | -24.90 |
Covariance contribution | -0.43 |
Combinations/Pair | 1.14 |
Mean z-score | -2.31 |
Structure conservation index | 0.85 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864203 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6267204 110 - 22224390 ACAGUUUU----------ACACAGUUUGUAUGCUAAUCUUAGGGUUUUCUUCUGGGCUUUCUAGAAAAUACCUUCCGACUCACCUAGAAAACUUAAGGAGCUGUAUAAGACGCAGAAACU ..((((((----------.....((((.(((((...((((..((((((((...((....((..(((......))).))....)).))))))))..))))...)))))))))...)))))) ( -23.80) >DroSec_CAF1 9390 110 - 1 ACAGUUUU----------ACACAGUUUGUAUGCUAAUCUUAGGGUUUUAUUCUGGGCUUUCUAGAAAAUACCUUCCGGCUCACCUAGGAAUCCCUAGGAGUUGUAUAAGACGCUAAAACU ..((((((----------(....((((.(((((...((((((((.....(((((((....(..(((......)))..)....)))))))..))))))))...)))))))))..))))))) ( -32.00) >DroSim_CAF1 10729 120 - 1 ACAGUUUUACACAGUUUUACACAGUUUGUAUGCUAAUCUUAGGGUUUUAUUCUGGGCUUUCCAGAAAAUACCUUCCGGCUCACCUAGGAAUCCCUAGGAGUUGUAUAAGACGCUGAAACU ............(((((((....((((.(((((...((((((((.....(((((((....((.(((......))).))....)))))))..))))))))...)))))))))..))))))) ( -33.50) >consensus ACAGUUUU__________ACACAGUUUGUAUGCUAAUCUUAGGGUUUUAUUCUGGGCUUUCUAGAAAAUACCUUCCGGCUCACCUAGGAAUCCCUAGGAGUUGUAUAAGACGCUGAAACU ..((((((...............((((.(((((...((((((((.....(((((((....((.(((......))).))....)))))))..))))))))...)))))))))...)))))) (-25.34 = -24.90 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:04 2006