Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,266,275 – 6,266,381 |
Length | 106 |
Max. P | 0.990724 |
Location | 6,266,275 – 6,266,381 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.29 |
Mean single sequence MFE | -32.98 |
Consensus MFE | -14.56 |
Energy contribution | -15.62 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.28 |
Mean z-score | -3.02 |
Structure conservation index | 0.44 |
SVM decision value | 2.23 |
SVM RNA-class probability | 0.990724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6266275 106 - 22224390 AUUAAAUGGAGUGUUCAUUGUCUCUAAGUCGAUGGAUAUUUAAAAGGCAAUGGG---------AUAUGUGUAUCUCUCCGUA-UUUUUAAGUAUCCCCAAAUGGGGG----GGGGGGGGG ........((((((((((((.(.....).))))))))))))...(.(((.....---------...))).).((((((((((-((....)))))((((....)))))----))))))... ( -28.50) >DroSec_CAF1 8462 120 - 1 AUUAAAUGGAGUGUUCAUUGUCUCCAAGUCGAUGGAUAUUUAAAAGGCAAUGGAUAUAGGGACAUAUGUGUAUCUCUCGGUACUUUUUAAGUGUCCCCAAAGGGGCAUUUUAAAGUGCCA ..........((((((((((((((((......)))).........)))))))))))).((((.(((....))).))))((((((((..(((((((((....))))))))).)))))))). ( -41.50) >DroSim_CAF1 9820 120 - 1 AUUAAAUGGAGUGUUCAUUGUCUCCAAGUCGAUGGAUAUUUAAAAGGCAAUGGAUAUGGGGACAUAUGUGUAUCUCUCAGUACUUUUUAAGUGUCCCCAAAGGGGCAUUUUAAAGUGCCA ........((((((((((((.(.....).))))))))))))....(((.(((.(((((....))))).)))..........(((((..(((((((((....))))))))).)))))))). ( -39.70) >DroYak_CAF1 5615 95 - 1 AUUAAAUGGUGUGUUCAUUGUUUCUAAAUCGAUGGGUACUUAAAGGGCAAU----------------AUCUAUCUCUUGAUAG-------AU-GCCAGAAACAGGCAUUUUAAAAU-CUA ...(((((.((((..(((((.........)))))..)))......((((..----------------.((((((....)))))-------))-))).......).)))))......-... ( -22.20) >consensus AUUAAAUGGAGUGUUCAUUGUCUCCAAGUCGAUGGAUAUUUAAAAGGCAAUGGA_________AUAUGUGUAUCUCUCGGUACUUUUUAAGUGUCCCCAAAGGGGCAUUUUAAAGUGCCA ........((((((((((((.(.....).))))))))))))....(((.....................(((((....)))))..........((((.....))))..........))). (-14.56 = -15.62 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:59 2006