Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,263,196 – 6,263,305 |
Length | 109 |
Max. P | 0.959003 |
Location | 6,263,196 – 6,263,305 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.45 |
Mean single sequence MFE | -26.98 |
Consensus MFE | -26.75 |
Energy contribution | -27.00 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.99 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959003 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6263196 109 - 22224390 GACUUGGCCAUUUAAGUGCGUGUUUUGAAUGCAUUUUGCAAAGAAAGUGAACCGAACAACGGA-----AAAUAAAUCAAGGUAUUCAGAGCAGGCGCAGUCAUACAAACACACU------ ((((...........((((.((((((((((((..((..(.......)..))(((.....))).-----............)))))))))))).)))))))).............------ ( -28.80) >DroSec_CAF1 4893 109 - 1 GACUUGGCCAUUUAAGUGCGUGUUUUGAAUGCAUCUUGCAAAGAAAGUGAACCGAACAACGGA-----AAAUAAAUCAAGGUAUUCAGAGCAGGCGCAGUCAUACAAACACACU------ ((((...........((((.((((((((((((...(..(.......)..).(((.....))).-----............)))))))))))).)))))))).............------ ( -28.10) >DroSim_CAF1 4834 109 - 1 GACUUGGCCAUUUAAGUGCGUGUUUUGAAUGCAUCUUGCAAAGAAAGUGAACCGAACAACGGA-----AAAUAAAUCAAGGUAUUCAGAGCAGGCGCAGUCAUACAAACACACU------ ((((...........((((.((((((((((((...(..(.......)..).(((.....))).-----............)))))))))))).)))))))).............------ ( -28.10) >DroYak_CAF1 4364 120 - 1 GACUUGGCCAUUUAAGUGCGUGUUUUCAAUGCAUCUUGCAAAGAAAGUGAACCGAAAAACGGAAACGAAAAUAAAUCAAGGUAUUCAGAGCAGGCGCAGUCAUACAAACACACACCACAC ((((...........((((.((((((.(((((..((((........(....).......((....)).........))))))))).)))))).))))))))................... ( -22.90) >consensus GACUUGGCCAUUUAAGUGCGUGUUUUGAAUGCAUCUUGCAAAGAAAGUGAACCGAACAACGGA_____AAAUAAAUCAAGGUAUUCAGAGCAGGCGCAGUCAUACAAACACACU______ ((((...........((((.((((((((((((...(..(.......)..).(((.....)))..................)))))))))))).))))))))................... (-26.75 = -27.00 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:54 2006