Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,260,929 – 6,261,046 |
Length | 117 |
Max. P | 0.989002 |
Location | 6,260,929 – 6,261,046 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.95 |
Mean single sequence MFE | -29.20 |
Consensus MFE | -23.11 |
Energy contribution | -23.18 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.18 |
Mean z-score | -3.09 |
Structure conservation index | 0.79 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.989002 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6260929 117 + 22224390 AUAGAAUCGCAUAUUUUGAGUGUUAAGUGCAGGAAAUCCCUUAUCCCCAUGCCACAUCGUCAUAUUGGCAAGGCAACAAAUCCUUUUGCCAAACACUAAACGCUCUU---UGUGCCAAAC ........(((((....(((((((.((((.(((.....)))........(((((...........))))).(((((.........)))))...)))).)))))))..---)))))..... ( -30.50) >DroSec_CAF1 2639 111 + 1 AUGAAAUCGCAUAUUUUGAGUGUUAAGUGCAGGAAAUCCCUUAUCCCCAUGCCACA------UAUUGGCAAGGCAGCAAAUCCUUUUGCCAAACACUAAACGCUCUU---UGUGCCAAAC ........(((((....(((((((.((((.(((.....))).....((.(((((..------...))))).))..(((((....)))))....)))).)))))))..---)))))..... ( -32.20) >DroSim_CAF1 2539 111 + 1 AUAAAAUCGCAUAUUUUGAGUGUUAUGUGCAGGAAAUCCCUUAUCCCCAUGCCACA------UAUUGGCAAGGCAGCAAAUCCUUUUGCCAAACACUAAACGCUCUU---UGUGCCAAAC ........(((((....(((((((..(((.(((.....))).....((.(((((..------...))))).))..(((((....)))))....)))..)))))))..---)))))..... ( -29.60) >DroYak_CAF1 2092 119 + 1 AUAGAAUUCUAUAUUUUGAGUGUUGAGUGCAGGAAAUUUCUCAUUCCC-UGCCACAUUGUCAUAUUGACAGGACAGCAAAUCCUUUUGCCAAACACUAAACGCUUUUUUUUUUGUCAAAC ((((....)))).....(((((((.((((((((.(((.....))).))-)))....(((((.....)))))....(((((....))))).....))).)))))))............... ( -24.50) >consensus AUAAAAUCGCAUAUUUUGAGUGUUAAGUGCAGGAAAUCCCUUAUCCCCAUGCCACA______UAUUGGCAAGGCAGCAAAUCCUUUUGCCAAACACUAAACGCUCUU___UGUGCCAAAC ........(((((....(((((((.((((.(((.....))).......................(((((((((..........))))))))).)))).))))))).....)))))..... (-23.11 = -23.18 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:47 2006