Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,260,775 – 6,260,891 |
Length | 116 |
Max. P | 0.572430 |
Location | 6,260,775 – 6,260,891 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.04 |
Mean single sequence MFE | -28.06 |
Consensus MFE | -11.61 |
Energy contribution | -12.05 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.47 |
Mean z-score | -2.31 |
Structure conservation index | 0.41 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572430 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6260775 116 + 22224390 AACUACACGUGGCAGGAAAUCAUACCGGAAGAAAUAAUA---GCUCAAAUUGAUGGUA-UAAUGUUUAUUCUAAUAGAUAUUUUCAUAUUUUACAGCUAUAGAGCUGCUGUCAAGAAGGC .........((((((.(..((....(....).....(((---(((.......((((..-.(((((((((....))))))))).)))).......)))))).))..).))))))....... ( -23.84) >DroSec_CAF1 2481 120 + 1 AACUACACCUGGCAGGAAACCAUACUGCGAGAAAUAGUAGCAGCUCAAGCUGAUAGUAGUAAUAUUUAUUCAAAUAGCUAUUUCCCUAUUUUCCAGCUAUAGAGCUGCUGCCAAGAAUGG ........((.((((.........)))).)).....((((((((((.(((((..(((((.((((.((((....)))).))))...)))))...)))))...))))))))))......... ( -36.20) >DroSim_CAF1 2381 120 + 1 AACUACACCUGGCAGGAAACCAUACUGCGAGAAAUACUAGCAGCUCAAGUUGAUAGUAGUAAUAUUUAUUCUGAUAGCUAUUUCCCUAUUUUCCAGCUAUAGAGCUGCUGCCAAGAAUGG ........((.((((.........)))).))......(((((((((.(((((..(((((.((((.((((....)))).))))...)))))...)))))...)))))))))(((....))) ( -30.90) >DroYak_CAF1 1969 105 + 1 AAUAAUUCGUAGCAGGAGACCAUACUGAAAGAAAUAAUA---ACUCAAGUUAUGUGUA-UAACACAUAUUCUUGUAACUAUAGAAUUAUUUUAUGGCUGUAGAAUUAUU----------- ((((((((...((((........................---...((((.((((((..-...))))))..))))...(((((((.....))))))))))).))))))))----------- ( -21.30) >consensus AACUACACCUGGCAGGAAACCAUACUGCAAGAAAUAAUA___GCUCAAGUUGAUAGUA_UAAUAUUUAUUCUAAUAGCUAUUUCCCUAUUUUACAGCUAUAGAGCUGCUGCCAAGAAUGG .........((((((...............(((((((...((((....))))..((((((..((((......))))))))))...))))))).(((((....)))))))))))....... (-11.61 = -12.05 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:46 2006