Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,259,773 – 6,259,888 |
Length | 115 |
Max. P | 0.973126 |
Location | 6,259,773 – 6,259,888 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.65 |
Mean single sequence MFE | -37.12 |
Consensus MFE | -29.52 |
Energy contribution | -29.15 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.13 |
Mean z-score | -2.77 |
Structure conservation index | 0.80 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6259773 115 - 22224390 GGAGAAUGUGCGGGGCUAAGGUGUGUCCAAUCUGCUGUUUUUGGCAGAUGUUCUUGGCCUCGCAAGGCGUUCUUUCC----UUUUCAGUUUCAGUUCGCAGUUUCAGUUUUGC-AAAUUU (((((((((((((((((((((........(((((((......)))))))..))))))))))))...))))))..)))----................((((........))))-...... ( -39.20) >DroSec_CAF1 1404 108 - 1 GGGGAAAGUGUGGGG-UAAGGUGUGUCCAAUCUGCUGUUUUUGGCAGAUGUUCUUGGCCUCGAAUGGCGUUCCUUCU----UUUUCA------GUUUGCAGUUUCAGUUUUGC-AAAUUU .(..((((...((..-(..((.....)).(((((((......))))))).......(((......))))..))..))----))..)(------((((((((........))))-))))). ( -32.60) >DroSim_CAF1 1395 109 - 1 GGGGAAACUGCGGGGCUAAGGUGUGUCCAAUCUGCUGUUUUUGGCAGAUGUUCUUGGCCUCGAAUGGCGUUCCUUCU----UUUUCA------GUUCGCAGUUUCAGUUUUGC-AAAUUU ...((((((((((((((((((........(((((((......)))))))..))))))))))(((.((....))))).----......------....))))))))........-...... ( -37.70) >DroYak_CAF1 957 114 - 1 GGGGAAAGUCUGGGGCUAAGGUGUGUCCAAUCUGCUGUUUUUGGCAGAUGUUCUUGGCCUCGAAAGGCAUUCUCUUUUCUCUUUUCA------GUUCGCAGUUUCAGUUUUGCGAAAUUU ((((((.((((((((((((((........(((((((......)))))))..))))))))))...)))).))))))............------.(((((((........))))))).... ( -39.00) >consensus GGGGAAAGUGCGGGGCUAAGGUGUGUCCAAUCUGCUGUUUUUGGCAGAUGUUCUUGGCCUCGAAAGGCGUUCCUUCU____UUUUCA______GUUCGCAGUUUCAGUUUUGC_AAAUUU ((((((.((.(((((((((((........(((((((......)))))))..)))))))))))....)).))))))......................((((........))))....... (-29.52 = -29.15 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:45 2006