Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,256,308 – 6,256,427 |
Length | 119 |
Max. P | 0.837888 |
Location | 6,256,308 – 6,256,427 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.15 |
Mean single sequence MFE | -31.75 |
Consensus MFE | -18.95 |
Energy contribution | -18.82 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.15 |
Mean z-score | -2.43 |
Structure conservation index | 0.60 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6256308 119 - 22224390 CACAUCUCCAUCCCCUCACAUCCUUCCGCCGCCCAGGAGCAUUGCAACGUGUAUUCUAUUCCGGCUAUACCCUGCCACAGGGUAUUAAGCUUUUCAAU-UCGGAAACGCAGGAAAUCUUA .......................((((((((...((((((((......)))).))))....)))).((((((((...))))))))...((.((((...-...)))).)).))))...... ( -27.40) >DroSec_CAF1 22964 119 - 1 CACUUCACCAUCCCCACACAUCCAUGCGCCGCGCAGGAGCAUUGCAGCGUGUAUUCUAUUCCGGCAAUACCCUGCCACAGGGUAUUACGCUUUCCAAU-UCGGAAACUCAGGAAAUCUUA ...............((((.(((.((((...)))))))((......))))))......((((((((((((((((...)))))))))..)))((((...-..)))).....))))...... ( -32.80) >DroEre_CAF1 17486 114 - 1 CAGCCCACCAUUC--UCACUUCCUUCCG-CGCCCGGGAGCACUGCACCGUG--CUCCAUUCCGGCCAAUACCUGCCGCAGGGUAUUACGCUUUCCCAU-UCGGAAACUGAGGAAAUCUUG .............--....((((((..(-((((..(((((((......)))--)))).....))).(((((((......)))))))..))(((((...-..)))))..))))))...... ( -34.30) >DroYak_CAF1 30803 115 - 1 CAGUUCACCAUUC--UCACUUCCUUCCG-CGCCCAGGAGCAUUGCACUGUG--CUCUAUUCCGGCUAUACCCUGCCGCAGGGUAUUUCGCUUUUCCAUUUCGGAAACUCAGGAAAUCUUA .............--....(((((...(-((((..(((((((......)))--)))).....))).((((((((...))))))))...)).(((((.....)))))...)))))...... ( -32.50) >consensus CACUUCACCAUCC__UCACAUCCUUCCG_CGCCCAGGAGCAUUGCACCGUG__CUCUAUUCCGGCUAUACCCUGCCACAGGGUAUUACGCUUUCCAAU_UCGGAAACUCAGGAAAUCUUA ...................................(((((((......)))..)))).(((((((.((((((((...))))))))...)))((((......)))).....))))...... (-18.95 = -18.82 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:37 2006