Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,255,990 – 6,256,090 |
Length | 100 |
Max. P | 0.798498 |
Location | 6,255,990 – 6,256,090 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.47 |
Mean single sequence MFE | -28.12 |
Consensus MFE | -17.47 |
Energy contribution | -17.16 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.21 |
Mean z-score | -2.03 |
Structure conservation index | 0.62 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6255990 100 + 22224390 GAGUGGCUGGCGGGAUAAGUUGCCUCGC-------GUGGAGCGAGAAGACCAAAU---CAAAAACGGCAGCGACAACAGCAGCGUAAAAUUUAUAAAAA-UGCAGCAAAGA--------- ..((.((((.((.(((..(((..(((((-------.....)))))..)))...))---).....)).)))).))....((.((((.............)-))).)).....--------- ( -29.62) >DroSec_CAF1 22633 109 + 1 GAGUGGCUGGCGGGAUAAGUUGCCUCGC-------GUGGAGCGCGAAGACCAAAU---CAAAAACGGCGGCGACAACAGCAGCGUAAAAUUUAUAAAAAUUGUAGCAAAUAGCAUAA-UA ..((.((((...(.....((((((((((-------(.....))))).((.....)---)......))))))..)..)))).))...............(((((.((.....))))))-). ( -26.20) >DroEre_CAF1 17170 101 + 1 GAGUGGCUGGCGGGAUAAGUUGCCUUGCGA--------------GCAGACCAAAUCAUCAAAAAUGGCGGCAGCAACAGCAGCGUAAAAUUUAUAAAAA-UGCUGCAAGUA----AAGAA ..((.((((.((((.....(((((....).--------------)))).))...((((.....)))))).)))).)).(((((((.............)-)))))).....----..... ( -23.82) >DroYak_CAF1 30451 111 + 1 GAGUGGCUGGCGGGAUAAGUUGCCUUGCGAGUCGCGUAGCGCGAGAAGACCAAAU---CAAAAACGGCGGCGACAACCGCAGCGUAAAAUUUAUAAAAA-UGCUGCAAAUA----AA-AA ..((.((((.((.(((..(((..((((((..........))))))..)))...))---).....)).)))).))....(((((((.............)-)))))).....----..-.. ( -32.82) >consensus GAGUGGCUGGCGGGAUAAGUUGCCUCGC_______GUGGAGCGAGAAGACCAAAU___CAAAAACGGCGGCGACAACAGCAGCGUAAAAUUUAUAAAAA_UGCAGCAAAUA____AA_AA ..((.(((((((((.........))))).....................((..............)))))).))....((((((................)))))).............. (-17.47 = -17.16 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:36 2006