Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,254,958 – 6,255,077 |
Length | 119 |
Max. P | 0.508235 |
Location | 6,254,958 – 6,255,077 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.98 |
Mean single sequence MFE | -41.58 |
Consensus MFE | -28.96 |
Energy contribution | -31.21 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.11 |
Mean z-score | -1.57 |
Structure conservation index | 0.70 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6254958 119 + 22224390 UUCGACUUGGAUCUG-CCCAGUCGGGUUCAAUAACGUCCUGUUUCGUGUCCUUGCGAUUAGGUUGCGGAGCAGCCGGCUGGAGCCAUGGAUUCAUCCCGGAUUUAUUGCUGCAUUUCCAU .......((((..((-((((((((((((....)))...((((((((((.(((.......))).))))))))))))))))))(((.((((((((.....)))))))).))))))..)))). ( -46.40) >DroSec_CAF1 21618 119 + 1 GUCGUCUUGGAUCUG-CCCAGUCGGGUUCAAUAAAGUCCUGUUUCGUGUCCUUGCGAUUAGGUUGCGGAGCAGUCGGCUGGGGCCAUGGAUUCAUCCUGGAUUUAUUGCUGCAUUUCCAG .......((((..((-(((((((((.............((((((((((.(((.......))).))))))))))))))))))(((.((((((((.....)))))))).))))))..)))). ( -42.81) >DroEre_CAF1 16191 119 + 1 GCCGACUUGGAUCUG-CCCAGUCCGUUUCAAUAAAGUCCUGUUUCGUGUCCUUGCGUUUCGGUGCCGGAGCGGCCGUCUGGAGCCAGGGAUUCGUCCUGGAUUUAUUGCUGCAUUUCCAU ...((((.((.....-)).)))).((..(((((((.(((.....((.(((((((.(((((((.((((...))))...)))))))))))))).))....))))))))))..))........ ( -41.30) >DroYak_CAF1 29465 120 + 1 GCCGACUUGGAUCUGGCCCAGUCCGGUCCAAUAAAGUCCUGUUUCGUGUCCUUGCGAUUAGGUGCCGGAGCAGCCGUCUGGAGCCAUGGCUUCAUCCUGGAUUUAUUUCUACAUUUCCGC ((.((.(((((((.(((...))).)))))))..(((((((((((((.(((((.......))).)))))))))...(..((((((....))))))..).))))))...........)).)) ( -35.80) >consensus GCCGACUUGGAUCUG_CCCAGUCCGGUUCAAUAAAGUCCUGUUUCGUGUCCUUGCGAUUAGGUGCCGGAGCAGCCGGCUGGAGCCAUGGAUUCAUCCUGGAUUUAUUGCUGCAUUUCCAU .......((((..((..((((((((.............((((((((((.(((.......))).))))))))))))))))))(((.((((((((.....)))))))).))).))..)))). (-28.96 = -31.21 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:33 2006