Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,249,839 – 6,249,959 |
Length | 120 |
Max. P | 0.782222 |
Location | 6,249,839 – 6,249,959 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -29.48 |
Consensus MFE | -24.33 |
Energy contribution | -24.14 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.03 |
Structure conservation index | 0.83 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6249839 120 + 22224390 UCGCAGCGAAUUGUUUAUGCAGCUGCCACUGCUUCAAACUAGUUGGCAUUAAUAUAACUGUAUAGAUAUAGCCAUAGCUGCUCACAUUCCCCAAUGUUUUUGCGGCGCAAAUUUUGCGAA (((((((....(((((((((((.((((((((........))).))))).........)))))))))))..))....(((((..(((((....)))))....)))))........))))). ( -34.20) >DroSec_CAF1 16616 117 + 1 UCGCAGCGAAUUGUUUAUGCAGCUGCCACUGCUUCAAACUAGUUAGCAUUAAUAUAACUGUAUAGAUAUAGCCAUAGCUGCUCACUUUUCCCAAUGUUUUUG---CGCAAAUUUUGCGAA ((((((.(((..((....(((((((...(((..((....((((((.........))))))....))..)))...)))))))..))..)))....(((.....---.)))....)))))). ( -24.90) >DroEre_CAF1 11287 117 + 1 UCGCAGCGAAUUGUUUAUGCAGCUGCCACUGCUUCAAACUAGUUAGCAUUAAUAUAACUGUAUAGAUAUUGCCAUAGCUGCUCACUUUUCGCAAUGUUUUUG---CGCAAAUUUUGCGAA ((((((((((..((....(((((((.....((.((....((((((.........))))))....))....))..)))))))..))..)))))..(((.....---.))).....))))). ( -28.60) >DroYak_CAF1 23755 117 + 1 UCGCAGCGAAUUGUUUAUGCAGCUGCCACUGCUUCAAACUAGUUAGCAUUAAUAUAACUGUAUAGAUAUUGCUAUAGCUGCUCACUUUUCGCAAUGGUUUUG---CGCAAAUUUUGCGAA ((((((((((..((....(((((((..((((........))))(((((.((.((((....))))..)).))))))))))))..))..)))))..(((.....---).)).....))))). ( -30.20) >consensus UCGCAGCGAAUUGUUUAUGCAGCUGCCACUGCUUCAAACUAGUUAGCAUUAAUAUAACUGUAUAGAUAUAGCCAUAGCUGCUCACUUUUCCCAAUGUUUUUG___CGCAAAUUUUGCGAA ..(((((....(((((((((((.......((((...........)))).........)))))))))))........)))))........................((((.....)))).. (-24.33 = -24.14 + -0.19)
Location | 6,249,839 – 6,249,959 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -29.83 |
Consensus MFE | -26.26 |
Energy contribution | -26.70 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.87 |
Structure conservation index | 0.88 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6249839 120 - 22224390 UUCGCAAAAUUUGCGCCGCAAAAACAUUGGGGAAUGUGAGCAGCUAUGGCUAUAUCUAUACAGUUAUAUUAAUGCCAACUAGUUUGAAGCAGUGGCAGCUGCAUAAACAAUUCGCUGCGA .(((((...(((((...)))))......(.(((.(((..((((((((((((.((....)).)))))))....(((((.((.((.....))))))))))))))....))).))).)))))) ( -32.30) >DroSec_CAF1 16616 117 - 1 UUCGCAAAAUUUGCG---CAAAAACAUUGGGAAAAGUGAGCAGCUAUGGCUAUAUCUAUACAGUUAUAUUAAUGCUAACUAGUUUGAAGCAGUGGCAGCUGCAUAAACAAUUCGCUGCGA .(((((......(((---......((((......)))).((((((((((((.((....)).)))))))....(((((.((.((.....))))))))))))))..........)))))))) ( -26.70) >DroEre_CAF1 11287 117 - 1 UUCGCAAAAUUUGCG---CAAAAACAUUGCGAAAAGUGAGCAGCUAUGGCAAUAUCUAUACAGUUAUAUUAAUGCUAACUAGUUUGAAGCAGUGGCAGCUGCAUAAACAAUUCGCUGCGA (((((((..(((...---...)))..)))))))......(((((..(((((.((..((((....)))).)).)))))....(((((..(((((....))))).))))).....))))).. ( -30.40) >DroYak_CAF1 23755 117 - 1 UUCGCAAAAUUUGCG---CAAAACCAUUGCGAAAAGUGAGCAGCUAUAGCAAUAUCUAUACAGUUAUAUUAAUGCUAACUAGUUUGAAGCAGUGGCAGCUGCAUAAACAAUUCGCUGCGA .((((....(((.((---(((.....))))).)))))))(((((..(((((.((..((((....)))).)).)))))....(((((..(((((....))))).))))).....))))).. ( -29.90) >consensus UUCGCAAAAUUUGCG___CAAAAACAUUGCGAAAAGUGAGCAGCUAUGGCAAUAUCUAUACAGUUAUAUUAAUGCUAACUAGUUUGAAGCAGUGGCAGCUGCAUAAACAAUUCGCUGCGA (((((((..((((.....))))....)))))))......(((((..(((((.((..((((....)))).)).)))))....(((((..(((((....))))).))))).....))))).. (-26.26 = -26.70 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:28 2006