Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,248,927 – 6,249,044 |
Length | 117 |
Max. P | 0.670202 |
Location | 6,248,927 – 6,249,044 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.97 |
Mean single sequence MFE | -35.58 |
Consensus MFE | -27.89 |
Energy contribution | -28.07 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.10 |
Mean z-score | -1.94 |
Structure conservation index | 0.78 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6248927 117 + 22224390 AAGUCCUUUGAAGCCUCGAGUGGCCAACGCGGCCAAAGGAGGGCAAUAAAGUUGGCUUAGACAGCCA---GAAGAUAGUCGAAAACUUUAUUGAUAUUCAUAUUGCAAGUGCAACUUUCU ........((((.((((...(((((.....)))))...)))).((((((((((((((.....)))).---((......))...))))))))))...))))..((((....))))...... ( -34.10) >DroSec_CAF1 15720 117 + 1 AAGUCCUUUGAAGCCUCGAGUGGCCAACGCGGCCAAAGGAGGGCAAUAAAGUUGGCUCAGACAGCCG---GCAGAUAGUCGAAAGCUUUAUUGAUAUUCAUAUUGCAGAUGCAACUUUCU ........((((.((((...(((((.....)))))...)))).((((((((((((((.....))))(---((.....)))...))))))))))...))))..((((....))))...... ( -36.80) >DroEre_CAF1 10408 117 + 1 AAGUCCUUUGAAGCCUCGAGUGGCCAACGCGGCCAAAGGAGGGCAAUAAAGUUGGCUCAGACUGCCA---GCAGAUAGUCGAAAACUUUAUUGAUAUUCAUAUUGGAAGUGGAACUUCCU ........((((.((((...(((((.....)))))...)))).((((((((((...((.(((((.(.---...).))))))).))))))))))...))))....(((((.....))))). ( -37.80) >DroYak_CAF1 22822 120 + 1 AAGUCCUUUGAAGCCUCGAGUGGCCAACGCGGCCAAAGGAGGGCAAUAAAGUUGGCUCAGAUUGGCAGCAGCAGAUAGUCGAAAACAUUAUUGAUAUUCAUAUUGCAAGUGGAACUUUCU ((((((.......((((...(((((.....)))))...))))((((((..((((.(.......).))))....((..(((((........)))))..)).))))))....)).))))... ( -33.60) >consensus AAGUCCUUUGAAGCCUCGAGUGGCCAACGCGGCCAAAGGAGGGCAAUAAAGUUGGCUCAGACAGCCA___GCAGAUAGUCGAAAACUUUAUUGAUAUUCAUAUUGCAAGUGCAACUUUCU ........((((.((((...(((((.....)))))...)))).((((((((((...((.(((((.(.......).))))))).))))))))))...)))).................... (-27.89 = -28.07 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:23 2006