Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,248,688 – 6,248,779 |
Length | 91 |
Max. P | 0.671441 |
Location | 6,248,688 – 6,248,779 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 95.70 |
Mean single sequence MFE | -23.54 |
Consensus MFE | -21.68 |
Energy contribution | -21.68 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.92 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6248688 91 + 22224390 CCAAGUUGAAUCAGAAAAGCCGAGCGAACUGAACUGAAACCAAAGCGACGGC---GGCGGCGAAUCGAACGCUUUUGAUUCAAUAAACGUCAAU ....((((((((((((..((((.((...................))..))))---.(((..........))))))))))))))).......... ( -23.51) >DroSec_CAF1 15489 88 + 1 CCAAGUUGAAUCAGAAAAGCCGAGCGAACUGAACUGAAACCAAAGCGACGGC------GGCGAAUCGAACGCUUUUGAUUCAAUAAACGUCAAU ....((((((((((((..((((.((...................))..))))------.(((.......))))))))))))))).......... ( -22.81) >DroYak_CAF1 22589 94 + 1 CCAAGUUGAAUCAGAAAAGCCGAGCGAACUGAACUGAAACCAAAGCGACGGCGGCGGCGGCGAAUCGAACGCUUUUGAUUCAAUAAACGUCAAU ....((((((((((((..((((.((...................))..)))).(((.(((....)))..))))))))))))))).......... ( -24.31) >consensus CCAAGUUGAAUCAGAAAAGCCGAGCGAACUGAACUGAAACCAAAGCGACGGC___GGCGGCGAAUCGAACGCUUUUGAUUCAAUAAACGUCAAU ....((((((((((((..((((.((...................))..)))).......(((.......))))))))))))))).......... (-21.68 = -21.68 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:22 2006