Locus 2313

Sequence ID X_DroMel_CAF1
Location 6,247,383 – 6,247,486
Length 103
Max. P 0.873156
window3746

overview

Window 6

Location 6,247,383 – 6,247,486
Length 103
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 78.13
Mean single sequence MFE -24.47
Consensus MFE -17.76
Energy contribution -17.32
Covariance contribution -0.44
Combinations/Pair 1.17
Mean z-score -1.72
Structure conservation index 0.73
SVM decision value 0.88
SVM RNA-class probability 0.873156
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6247383 103 - 22224390
AGCAACUGCUGCUCAUAUUAAAUGA-----------------AUAGCUUGGCAUAAUAAGAAAGUGCAUUUAUCUGUGAGUGCCUUGCAGUUGAAUAAAUUAGAAAAUCCCUUAAAACGA
..(((((((.(((((((.((((((.-----------------....((((......))))......))))))..))))))).....)))))))........................... ( -23.30)
>DroSec_CAF1 14249 103 - 1
AGCAACUGCUGCUCAUAUUAAAUGA-----------------AUAGCUUGGCAUAGUGAGAAAGUGCAUUUAUCUGUGAGUGCAUUGCAGUUGAAUAAAUUAGAAAAUCCUUUAAAACCA
..(((((((.(((((((.((((((.-----------------...((((..(.....)...)))).))))))..))))))).....)))))))........................... ( -23.80)
>DroEre_CAF1 8692 120 - 1
AACAACUGCUGCUCACAUUAAGUAACACCUUUUUGUUUUUGCCUGGACUGACGCAAUAGGAAAGUGCAUUUAUCUGUGAGUGCCCUGCAGUUGAAUACAUUAGAAAGUCCUUUAAAACAA
..(((((((.(((((((.(((((..(((.(((((((...(((..........)))))))))).))).)))))..))))))).....)))))))........................... ( -26.30)
>consensus
AGCAACUGCUGCUCAUAUUAAAUGA_________________AUAGCUUGGCAUAAUAAGAAAGUGCAUUUAUCUGUGAGUGCCUUGCAGUUGAAUAAAUUAGAAAAUCCUUUAAAACAA
..(((((((.(((((((.((((((......................((((......))))......))))))..))))))).....)))))))........................... (-17.76 = -17.32 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:16 2006