Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,246,794 – 6,246,914 |
Length | 120 |
Max. P | 0.539486 |
Location | 6,246,794 – 6,246,914 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.56 |
Mean single sequence MFE | -33.45 |
Consensus MFE | -20.69 |
Energy contribution | -20.12 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.75 |
Structure conservation index | 0.62 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6246794 120 - 22224390 CGCGUGUGACAUUGUCAUUUGUUUAAGCUUUAUUAAUGGUUUUUUGGCUUUGUGCUGCGCAUUGUGGCGAAAGGCGUAUCGCGAAUCGCGCGUUGCGAGUUGCCAGUUGCCAGUAGUGAA ((((.((.(((..((((.......(((((........)))))..))))..)))))))))(((((((((((..((((..((((((........))))))..))))..)))))).))))).. ( -38.50) >DroSec_CAF1 13734 106 - 1 CGCGUGUGACAUUGUCAUUUGUUUAAGCUUUAUUAAUGGUUUUUUGGCUUUGUGCUGCGCAUUGUGGCGAAAGGCGUAUCGCGAAUAGCG--------------AGUUGCGAGUUGCCAG .(((((..(((..((((.......(((((........)))))..))))..)))..)))))....((((((...(((..((((.....)))--------------)..)))...)))))). ( -32.10) >DroEre_CAF1 8130 93 - 1 CGCUUGCGACAUUGUCAUUUGUUUAAGCUUUAUUAAUGGUUUUUUGGCUUUGUGCUGCGCAGUGUGGCGAAAGGCGUAUUGCGAGCUGCG--------------AGU------------- .((((((((((..((((.......(((((........)))))..))))..)))(((.(((((((((.(....).))))))))))))))))--------------)))------------- ( -33.00) >DroYak_CAF1 20781 106 - 1 CGCGUGUGACAUUGUCAUUUGUUUAAGCUUUAUUAAUGGUUUUUUGGCUUUGUGCUGCGCUGUGUGGCGAAGGGCGUAUCGCGAGUUGCG--------------AGUUGCUAGUAGCGCA .(((.(((((...))))).)))..(((((................)))))(((((((((((....)))....((((..((((.....)))--------------)..)))).)))))))) ( -30.19) >consensus CGCGUGUGACAUUGUCAUUUGUUUAAGCUUUAUUAAUGGUUUUUUGGCUUUGUGCUGCGCAGUGUGGCGAAAGGCGUAUCGCGAAUUGCG______________AGUUGC_AGUAGCGAA (((.((((((((((......((....)).....)))))........(((((.(((..(.....)..))).)))))...)))))....))).............................. (-20.69 = -20.12 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:16 2006