Locus 2311

Sequence ID X_DroMel_CAF1
Location 6,243,924 – 6,244,044
Length 120
Max. P 0.839293
window3744

overview

Window 4

Location 6,243,924 – 6,244,044
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.08
Mean single sequence MFE -33.10
Consensus MFE -23.10
Energy contribution -23.72
Covariance contribution 0.62
Combinations/Pair 1.18
Mean z-score -2.24
Structure conservation index 0.70
SVM decision value 0.74
SVM RNA-class probability 0.839293
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6243924 120 - 22224390
GCUGAAGGAUCAACCUUUAUUUAGUUGAUGCACAAAAUCCUUUUUGCUUUCAAUUGCGAAUAUUUUUCAGCAUUUUUCGCUUGUGAUUGAGUAAACCUGUUGCCCCGGCAGAGUAAUCGC
(((((((.((((((.........)))))).)...........(((((........))))).....))))))...........(((((((..........((((....))))..))))))) ( -26.20)
>DroSec_CAF1 12145 120 - 1
GCUGGAGGAUCGACCUUUAUUUAGUUGAUGCACAAAAUCCUUUUUGCUCUCGACUGCAAAUAUUUUUCAGCAUUUUUCGCUUGUGAUUGAGUAAACCUGUUGCCCCGGCAGAGUAAUCGU
(((((.((..((((.((((((((((((((((..((((.....(((((........)))))...))))..)))))..........)))))))))))...))))))))))).((....)).. ( -27.90)
>DroEre_CAF1 6955 120 - 1
GCUGCAGGAUCGACGUUUACUCAGUUGCUGCGCAAAAUCCUUUUUGCUUUCAACUGCAAAUAUUUUUCAGCAUUUCUCGCUUGUGAUUGAGUAAACCUGUUGAUCCGGCAGAGUAAUCGC
.((((.(((((((((((((((((((..(.((((((((....))))))......(((.(((....))))))........))..)..)))))))))))..)))))))).))))......... ( -45.60)
>DroYak_CAF1 19957 117 - 1
GCUGCAGAAUCGACUUUUAUUUAGUUG---CACAAAAUGCACUUUGCUUUCGACUGCAAAUGUAUUUCGGCAUUUUUCGCAUGUGAUUGCGUAAACCUGUUGAUCUGCCAGAGUAAUCGC
((.(((((.(((((.(((((.((((..---(((.(((((((.(((((........)))))))))))).)((.......)).))..)))).)))))...))))))))))..((....)))) ( -32.70)
>consensus
GCUGCAGGAUCGACCUUUAUUUAGUUGAUGCACAAAAUCCUUUUUGCUUUCAACUGCAAAUAUUUUUCAGCAUUUUUCGCUUGUGAUUGAGUAAACCUGUUGACCCGGCAGAGUAAUCGC
.(((..((((((((.((((((((((.....(((((.......(((((........))))).........((.......)))))))))))))))))...))))))))..)))......... (-23.10 = -23.72 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:15 2006