Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,243,094 – 6,243,213 |
Length | 119 |
Max. P | 0.637370 |
Location | 6,243,094 – 6,243,213 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.96 |
Mean single sequence MFE | -23.37 |
Consensus MFE | -19.76 |
Energy contribution | -20.32 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.89 |
Structure conservation index | 0.85 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637370 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6243094 119 - 22224390 GAGUCAAUCGAUUAUUCAUCGAAUAUGCUAAUGGCCAAAUCACUGGGCCCAACUAAAAUCCCCAAUUAAGGGCUGUAAUUGCAGUCCACACAACUUUUCGACUCUCAUUAAAUAUA-ACU (((((..(((((.....)))))..........((((.........))))....................(((((((....)))))))............)))))............-... ( -27.30) >DroSec_CAF1 11358 119 - 1 GAGUCAAUCGAUUAUUCAUCGAAUAUGCUAAUGGCCAAAUCACUGGGACCAACUAAAAUCCCCAAUUAAGGCCUGUAAUUGCAGUCCACACAACUUUUCGACGCUCAUUAAAUAUA-ACU ((((...((((..............(((....((((........((((..........)))).......)))).......)))..............)))).))))..........-... ( -20.55) >DroEre_CAF1 6115 119 - 1 AAGUCAAUCGAUUAUUCAUCGAAUAUGCUAAUGGCCAAAUCACUGGGCCCAACUAAAAUCCCCAAUUAAGCGCUGUAAUUGCAGUCUACACAACUUUUCGGCGCUCAUUAAAUAUA-ACU .......(((((.....)))))((((..(((((..........((((.............))))....(((((((.((..(..((....))..)..)))))))))))))).)))).-... ( -20.22) >DroYak_CAF1 19115 120 - 1 AAGUCAAUCGAUUAUUCAUCGAAUAUGCUAAUGGCCAAAUCACUGGGCCCAACUAAAAUCCCCAAUUAAGGGCUGUAAUUGCAGUCCAUACAACUUUUCGGCGCUCAUUAAAUAUAAACU .......(((((.....)))))((((..((((((((.......((((.............)))).....(((((((....)))))))............)))...))))).))))..... ( -25.42) >consensus AAGUCAAUCGAUUAUUCAUCGAAUAUGCUAAUGGCCAAAUCACUGGGCCCAACUAAAAUCCCCAAUUAAGGGCUGUAAUUGCAGUCCACACAACUUUUCGACGCUCAUUAAAUAUA_ACU .......(((((.....)))))((((..(((((((........((((.............)))).....(((((((....)))))))...............)).))))).))))..... (-19.76 = -20.32 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:14 2006