Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 799,550 – 799,641 |
Length | 91 |
Max. P | 0.883313 |
Location | 799,550 – 799,641 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 79.28 |
Mean single sequence MFE | -24.35 |
Consensus MFE | -23.79 |
Energy contribution | -22.77 |
Covariance contribution | -1.02 |
Combinations/Pair | 1.26 |
Mean z-score | -1.53 |
Structure conservation index | 0.98 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 799550 91 - 22224390 --AUGCUUUUCUCUUCCUUCAAACAGUUCCCAUUUGCUGGUGGAGUGGCUGAACCUGAUCCUCAGCUGCCAUGAACUGGUGGACACGUACUAC --............(((......(((((((((((....))))).(..(((((.........)))))..)...))))))..))).......... ( -22.70) >DroPse_CAF1 1568 92 - 1 CAAUCCUUUCCU-UUAAUUUUGACAGCUCCCAUCUGCUGGUGGAGUGGCUGAAUCUGAUCCUCAGCUGCAACGAGCUGAUUGAUACCUACUAC ............-..........(((((((((((....))))).(..(((((.........)))))..)...))))))............... ( -26.70) >DroEre_CAF1 1537 91 - 1 --CGGCUUUUCUCUUCCUUCAAACAGCUCCCAUUUGCUGGUGGAGUGGCUGAACCUGAUCCUCAGCUGCCACGAGCUGGUGGACACGUACUAC --(((((...((((.((..((((.........))))..)).)))).))))).((.((.(((((((((......)))))).))))).))..... ( -26.80) >DroYak_CAF1 1534 90 - 1 --CGACUUCUCUCUUCCUUCA-ACAGCUCCCACUUGCUGGUGGAGUGGCUGAACUUGAUCCUCAGCUGCCAUGAACUGGUGGACACGUACUAC --............(((....-.(((.(((((((....))))).(..(((((.........)))))..)...)).)))..))).......... ( -21.50) >DroAna_CAF1 1559 75 - 1 ------------------UCUUACAGUUCCCAUUUGCUGGUGGAGUGGCUUAACCUUAUACUGAGCUGCCACGAACUGGUGGACACAUACUAC ------------------(((..(((((((((((....))))).(((((.....(((.....)))..)))))))))))..))).......... ( -21.70) >DroPer_CAF1 1568 92 - 1 CAAUCCUUUCCU-UUAAUUUUGACAGCUCCCAUCUGCUGGUGGAGUGGCUGAAUCUGAUCCUCAGCUGCAACGAGCUGAUUGAUACCUACUAC ............-..........(((((((((((....))))).(..(((((.........)))))..)...))))))............... ( -26.70) >consensus __AUCCUUUUCU_UUCCUUCAAACAGCUCCCAUUUGCUGGUGGAGUGGCUGAACCUGAUCCUCAGCUGCCACGAACUGGUGGACACGUACUAC ..................((...(((((((((((....))))).(..(((((.........)))))..)...))))))...)).......... (-23.79 = -22.77 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:29 2006