Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,237,262 – 6,237,369 |
Length | 107 |
Max. P | 0.573291 |
Location | 6,237,262 – 6,237,369 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 91.24 |
Mean single sequence MFE | -34.33 |
Consensus MFE | -26.30 |
Energy contribution | -26.93 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.08 |
Mean z-score | -1.64 |
Structure conservation index | 0.77 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6237262 107 - 22224390 CAGUUGAACGGCCUGGACACACAGAGCCUGCCAAAGUGGCAGGCAGCAGAGAAAAUGCGGCGACCGUUCUGGCAAAAAGGAAAAUCGCACUGCGCGAAAAUCUUUUG ..(((((((((.(((......))).(((((((.....))))))).(((.......))).....)))))).)))..((((((...((((.....))))...)))))). ( -38.60) >DroSec_CAF1 10226 106 - 1 CAGUUGAACGGCCUGGACACACAGAGCCUGCCAAAGUGGCA-GCAGCAGAGAAAAUGCGGAGACCGUUGUGGCAAAAAGGAAAGCCGCACUGCGCGAAAAUUUGUUG ......(((((((((......))).)))((((.....))))-((.((((....((((.(....)))))(((((..........))))).))))))........))). ( -34.00) >DroSim_CAF1 13076 106 - 1 CAGUUGAACGGCCUGGACACACAGAGCCUGCCAAAGUGGCA-GCAGCAGAGAAAAUGCGGAGACCGUUGUGGCGAAAAGGAAAACCGCACUGCGCGAAAAUUGGUUG (((((....((((((......))).)))((((.....))))-((.((((....((((.(....)))))((((............)))).))))))...))))).... ( -31.40) >DroEre_CAF1 4984 106 - 1 CAGUUGAACGGCCUGGACACACAGCGCCUGCCAAAGUGGCA-GCAGGAGAGAAAAUGCGGAGACCGUUGUGGCACACAGAACAGCCACACUGCGCGAAAAUGCGUCG .........((((((......))).)))((((.....))))-((((.......((((.(....)))))(((((..........))))).))))((......)).... ( -33.30) >consensus CAGUUGAACGGCCUGGACACACAGAGCCUGCCAAAGUGGCA_GCAGCAGAGAAAAUGCGGAGACCGUUGUGGCAAAAAGGAAAACCGCACUGCGCGAAAAUUUGUUG .........((((((......))).)))((((.....)))).((.((((....((((.(....)))))(((((..........))))).))))))............ (-26.30 = -26.93 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:10 2006