Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,235,375 – 6,235,486 |
Length | 111 |
Max. P | 0.520133 |
Location | 6,235,375 – 6,235,486 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.13 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -12.70 |
Energy contribution | -12.45 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.07 |
Mean z-score | -2.12 |
Structure conservation index | 0.50 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6235375 111 + 22224390 CUUUAUUUUUUUACAUCACUGUUGGUCGUCCUGCUUCCAUGUGCUAAACAUUGCCAAUGCCAUUGUUCUUGUUCU---UCCUCGAAGGACCUGCAAGGACUCCGC------AGCCCGCAG ..................((((.(((......((....((((.....)))).))...(((....((((((((...---(((.....)))...))))))))...))------)))).)))) ( -25.10) >DroSec_CAF1 8429 102 + 1 CUUUAUUUUUUUACAUCACUGCUGG---UCCUGCUCCCAUGUGCUAAACAUUGCCAAUGCCAUUGUUCUUGUUCU---UCCUCGAAGGACCUGCAAGGACUCCGC------ACC------ ...................((((((---(...((....((((.....)))).))....))))..((((((((...---(((.....)))...))))))))...))------)..------ ( -21.40) >DroEre_CAF1 3001 109 + 1 CUUU-----UUUACUUCACUGCUGG---UCCUGCUCCCAUGUGCUAAACAUGGCCAAUGCCAUUGUUCUUGUUCU---UCUUCGAAGGACCUGCAAGGACUCCGGCACAGCAGCCCGCAC ....-----..........(((.((---..(((((.((((((.....))))))....((((...((((((((...---(((.....)))...))))))))...)))).))))))).))). ( -35.20) >DroYak_CAF1 16008 103 + 1 CUCU-----UUUUUUUC-----------UUCUACUU-CAUGUGCUAAACAUUGCCAAUGCCAUUGUUCUUGUUCUUCUUCUUCGAAGGACCUGCAAGGACGCUGCCACAGCACCACACAC ....-----........-----------........-..((((.....................((((((((..((((((...))))))...))))))))((((...))))....)))). ( -20.70) >consensus CUUU_____UUUACAUCACUGCUGG___UCCUGCUCCCAUGUGCUAAACAUUGCCAAUGCCAUUGUUCUUGUUCU___UCCUCGAAGGACCUGCAAGGACUCCGC______ACCCCGCAC .......................................((.((........))))........((((((((......(((.....)))...)))))))).................... (-12.70 = -12.45 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:06 2006