Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,235,025 – 6,235,115 |
Length | 90 |
Max. P | 0.802733 |
Location | 6,235,025 – 6,235,115 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 88.68 |
Mean single sequence MFE | -17.23 |
Consensus MFE | -16.38 |
Energy contribution | -16.17 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.16 |
Mean z-score | -1.51 |
Structure conservation index | 0.95 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802733 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6235025 90 - 22224390 AAAUCCAAAUCCAACUUCAAUUUAAGCUUUUGUCAGCGCAGGGAAGCAAAAACGCGGGGGCGUGGACUGGAAACUAGAAAAAAAAAAACC ...((((..(((.............((((((.(......).))))))....((((....))))))).))))................... ( -17.10) >DroSec_CAF1 8097 85 - 1 AAAUCCAAAUCCAACUUCAAUUUAAGCUUUUGUCGGCGCAAGGAAGCAAAAACGCGGCGGCGUGGACUGGAAACUUAAAAAAAAA----- ....................((((((.(((((((.((((...(..((......))..).)))).))).)))).))))))......----- ( -18.20) >DroEre_CAF1 2686 85 - 1 AAAUCCAAAUCCAACUUCAAUUUGAGCUUUUGUCAGCGCAAAGAAGCAAAAUCGCGGGGGCGUAGACUGAAAACUUAAAAAAAAA----- ....................((((((.(((((((.((((......((......))....)))).))).)))).))))))......----- ( -16.40) >consensus AAAUCCAAAUCCAACUUCAAUUUAAGCUUUUGUCAGCGCAAGGAAGCAAAAACGCGGGGGCGUGGACUGGAAACUUAAAAAAAAA_____ ....................((((((.(((((((.((((......((......))....)))).))).)))).))))))........... (-16.38 = -16.17 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:04 2006