Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,231,639 – 6,231,748 |
Length | 109 |
Max. P | 0.701471 |
Location | 6,231,639 – 6,231,748 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.37 |
Mean single sequence MFE | -36.00 |
Consensus MFE | -24.74 |
Energy contribution | -25.61 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.11 |
Mean z-score | -1.80 |
Structure conservation index | 0.69 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6231639 109 + 22224390 ----------ACCGCAUUUUAUCGCAGCCUCUCCGGCUGGCUGUUAUGACACUGCAAAGCGACAUCCACCUGUUGGUCAGCGCGAAAAACUGCGUCCGUAAUGCCAA-ACGGAAAUGGAA ----------.(((((.(((.((((((((.....)))).((((..(((.(.((....)).).)))..(((....))))))))))).))).))).(((((........-)))))...)).. ( -32.00) >DroSec_CAF1 4695 118 + 1 CCGCCUUUUCCACGCAUUUCAUCGCAGCCUCA-CGGCUGGCUGUUAUGACACUGCAACGCGACAUCCACCUGUUGGUCAGUCCGGAAAACUGCGUCCGUAAUGCCAA-CCGGAAACGGAA .(((.((((((..(((..((((.((((((...-.....)))))).))))...)))...(.(((..(((.....)))...))))))))))..)))(((((....((..-..))..))))). ( -38.90) >DroSim_CAF1 6766 118 + 1 CCGCCUUUUCCACGCAUUUCAUCGCAGCCUCA-CGGCUGGCUGUUAUGACACUGCAACGCGACAUCCACCUGUUGGUCAGUCCGGAAAACUGCGUCCGUAAUGCCAA-CCGGAAACGGAA .(((.((((((..(((..((((.((((((...-.....)))))).))))...)))...(.(((..(((.....)))...))))))))))..)))(((((....((..-..))..))))). ( -38.90) >DroYak_CAF1 12191 109 + 1 ----------CCCCAUUUUCAUCGCAUCCUCU-CGGCUGGUUGUUAUGACACUGCAACCCGACAUCCACCUGUUGGUCAGCCCGGAAAACUGCGUCUGUAAUGCCAAACCGGAAACGGGA ----------...((((.....((((...(((-.((((((((((.........)))))((((((......)))))).))))).)))....)))).....)))).....(((....))).. ( -34.20) >consensus __________CACGCAUUUCAUCGCAGCCUCA_CGGCUGGCUGUUAUGACACUGCAACGCGACAUCCACCUGUUGGUCAGCCCGGAAAACUGCGUCCGUAAUGCCAA_CCGGAAACGGAA .............(((((....(((((.......((((((((((.........)))...(((((......)))))))))))).......))))).....)))))....(((....))).. (-24.74 = -25.61 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:00 2006