Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,231,181 – 6,231,286 |
Length | 105 |
Max. P | 0.549312 |
Location | 6,231,181 – 6,231,286 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.61 |
Mean single sequence MFE | -30.06 |
Consensus MFE | -19.08 |
Energy contribution | -19.58 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.04 |
Mean z-score | -1.70 |
Structure conservation index | 0.63 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6231181 105 + 22224390 UUUCACGAUUGGAGCGAGGUCCUCGAGCACUUACAGCUUUAAUUUUCGCCACUCUGGUGACUUU---------------CGUUGGCGUCCUCGAUUGGCCAUUUUCUCAUUUGGAAAUUC ((((.(((.(((((...((((.(((((.((...((((........(((((.....)))))....---------------.))))..)).)))))..))))...))).)).)))))))... ( -26.72) >DroSec_CAF1 4244 99 + 1 UUUCACGAGUGGAGCGAGGUCCUCGAGCACUUACAGCUUUAAU-UUCGCCACUCUAGUGGCUUU---------------U-----CGUCCUCGAUUGGCCAUUUUCUCAUUUGGAAAUUC ((((.(((((((((((((((....((((.......))))..))-)))))......(((((((..---------------(-----((....)))..))))))).)).))))))))))... ( -30.70) >DroSim_CAF1 6324 99 + 1 UUUCACGAGUGGAGCGAGGUCCUCGAGCACUUACAGCUUUAAU-UUCGCCACUCUGGUGGCUUU---------------U-----CGUCCUCGAUUGGCCAUUUUCUCAUUUGGAAAUUC ((((.(((((((((((((((....((((.......))))..))-)))))......(((((((..---------------(-----((....)))..))))))).)).))))))))))... ( -30.60) >DroYak_CAF1 11728 119 + 1 UUUCACGAUUUGAGCAAGGUCCUUGUGCACUUACGGCUUUAAU-GUCGCCACUUUGGUGGCUUUGGUGGAGAACUGUUUCGUUGCCGCCGUCGAUUGGCAAUUUUCUCAUUGGGAAAUUC ((((.((((..(((((((...)))))((.(...((((......-...(((((....)))))...(((((..(((......))).)))))))))...))).....))..)))).))))... ( -32.20) >consensus UUUCACGAGUGGAGCGAGGUCCUCGAGCACUUACAGCUUUAAU_UUCGCCACUCUGGUGGCUUU_______________C_____CGUCCUCGAUUGGCCAUUUUCUCAUUUGGAAAUUC .....((((((((((.((((.(....).))))...))))))......(((((....)))))............................)))).......((((((......)))))).. (-19.08 = -19.58 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:59 2006