Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 65,417 – 65,535 |
Length | 118 |
Max. P | 0.895255 |
Location | 65,417 – 65,535 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 75.99 |
Mean single sequence MFE | -21.50 |
Consensus MFE | -9.68 |
Energy contribution | -10.52 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.18 |
Mean z-score | -2.09 |
Structure conservation index | 0.45 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 65417 118 + 22224390 -CUAAAGUAAUACUCCAGGUGAUAUUCUACAUAACGACGUAUGUAAAUACAGCUUGUAUUCAUUUACAAGAGAAAACGUUAUUGACUAUGCGAUGACAUUAAAAGCACCUUAUAACAGU -.....((.(((....(((((...((((..........((((....))))..((((((......))))))))))...(((((((......)))))))........)))))))).))... ( -22.80) >DroSec_CAF1 42626 114 + 1 CCUACAGAUAUACUCCAGGUGAUAUUCUACAUAACGACGUAUGUAGAUA-----UGUAUUCAUUUACAAGCAAAAACGUUAUUGGUCAUGCAAUGACAUUAAAAGCACCUUAUAACAAA ................(((((....((((((((......))))))))..-----((((......)))).........(((((((......)))))))........)))))......... ( -22.10) >DroSim_CAF1 42429 114 + 1 CCUACAGAUAUACUUCAGGUGAUAUUCUACAUAACGACGUAUGUAGAUA-----UGUAUUCAUUUACAAGCAAAAACGUUAUUGGUCAUGCAAUGACAUUAAAAGCACCUUAUAACAAU ................(((((....((((((((......))))))))..-----((((......)))).........(((((((......)))))))........)))))......... ( -22.10) >DroEre_CAF1 29726 101 + 1 CCUACAGGUAUACUCUAGGUGAUAUUCUGCAUAUCGACAUAUGUAUGUA-----UGUAUUCGUCUACUAGCAAAAACGUUAGUAA--ACUCAAUGGCA--------ACAUU---GCAUU ..((((..(((((......((((((.....))))))......)))))..-----))))...((.(((((((......))))))).--)).(((((...--------.))))---).... ( -24.80) >DroYak_CAF1 36482 108 + 1 CUUUCCGAUAUACUCCCGGUGAUAUUCAACAUAUCGACAUAUGUA---------UUUAAUCAUCCACAAUCAAAAAUGUUAUUGA--AUGCAACGGAAUUAAAACCACCUUAAAUCAUU ..(((((..........((((((.....((((((....)))))).---------....))))))..((.((((........))))--.))...)))))..................... ( -15.70) >consensus CCUACAGAUAUACUCCAGGUGAUAUUCUACAUAACGACGUAUGUAGAUA_____UGUAUUCAUUUACAAGCAAAAACGUUAUUGA__AUGCAAUGACAUUAAAAGCACCUUAUAACAAU .................((((......((((((......))))))................................(((((((......)))))))........)))).......... ( -9.68 = -10.52 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:34 2006