Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,227,388 – 6,227,499 |
Length | 111 |
Max. P | 0.827547 |
Location | 6,227,388 – 6,227,499 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.73 |
Mean single sequence MFE | -31.95 |
Consensus MFE | -22.13 |
Energy contribution | -23.44 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.03 |
Mean z-score | -3.18 |
Structure conservation index | 0.69 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6227388 111 + 22224390 GGGCGGGUAAUCAGAGCGAGGGUAUUAAUUGGGCUUUAAGCAAAGCUUAAUUGGUAAUUGGCAGACGGGCGG---------AGGGCCAAAAGGGAAAAUGCUGAACGGUGGCCAAAAAAA .(((.(.(..((((.((.((..(((((((((((((((....))))))))))))))).)).)).....(((..---------...))).............))))..).).)))....... ( -32.40) >DroSec_CAF1 1688 109 + 1 GGGCGAGUAAUCAGAGCGAGGGUAUUAAUUGGGCUUUAAGCAAAGCUUAAUUGGUAAUUGGCAGACGGGCGG-----------GGCCAAAAGGGAAAAUGCUGAACGGUGCCAAAAAAAA .((((.((..((((.((.((..(((((((((((((((....))))))))))))))).)).)).....(((..-----------.))).............))))))..))))........ ( -30.70) >DroSim_CAF1 3762 109 + 1 GGGCGGGUAAUCAGAGCGAGGGUAUUAAUUGGGCUUUAAGCAAAGCUUAAUUGGUAAUUGGCAGACGGGCGG-----------GGCCAAAAGGGAAAAUGCUGAACGGUGGCCAAAAAAA .(((.(.(..((((.((.((..(((((((((((((((....))))))))))))))).)).)).....(((..-----------.))).............))))..).).)))....... ( -30.70) >DroYak_CAF1 9365 120 + 1 GGACGGGUAAUCAGAGCGAGGGUAUUAAUUGGGCUUUAAGCAAAGCUUAAUUGGUAAUUGGCAGACGGACGGGCACGGAAAAGGAGCCAAAGGGAAAAUCCCGAAUGGUGGCCAAAAAAU (..((.(....)...((.((..(((((((((((((((....))))))))))))))).)).))...))..)((.(((((........))...(((.....))).....))).))....... ( -34.00) >consensus GGGCGGGUAAUCAGAGCGAGGGUAUUAAUUGGGCUUUAAGCAAAGCUUAAUUGGUAAUUGGCAGACGGGCGG___________GGCCAAAAGGGAAAAUGCUGAACGGUGGCCAAAAAAA .(((.(.(..((((.((.((..(((((((((((((((....))))))))))))))).)).)).....(((..............))).............))))..).).)))....... (-22.13 = -23.44 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:50 2006