Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,225,716 – 6,225,836 |
Length | 120 |
Max. P | 0.895191 |
Location | 6,225,716 – 6,225,836 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.26 |
Mean single sequence MFE | -47.80 |
Consensus MFE | -36.04 |
Energy contribution | -39.10 |
Covariance contribution | 3.06 |
Combinations/Pair | 1.05 |
Mean z-score | -2.04 |
Structure conservation index | 0.75 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895191 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6225716 120 + 22224390 GGUCCAAAUCCGAGCAUCUGGGGGUGGCUAUCUCGUAGCCCACAGCUUCACCAGCUCGAGCGCCAGAGCGCCUCCAGUGCGCCACCAUUGCUGGCCGCGAUGCUCCAGUUGGGCAAACUU .((((((....((((((((((((((((((((...)))))).............((((........)))))))))))(((.((((.......))))))))))))))...))))))...... ( -52.10) >DroSec_CAF1 93 108 + 1 GGUCCAAAUCCGAGCAUCUGGGGGUGGCUAUCCCGUAGCCCACAGCUCCUCCAGCUCGAGC---AGAGCGCCUCCAGUGCGCCACCGUUGCUGGCCGCGU---------UGGGCAAACUU .((((((...((.(((.((((((((((((((...))))))....(((((((......))).---.)))))))))))))))((((.......))))))..)---------)))))...... ( -45.20) >DroSim_CAF1 1234 117 + 1 GGUCCAAAUCCGAGCAUCUGGGGGUGGCUAUCCCGUAGCCCACAGCUCCUCCAGCUCGAGC---AGAGCGCCUCCAGUGCGCCACCGUUGCUGGCCGCGUUGCUCCAGUUGGGCAAACUU .((((((....(((((.((((((((((((((...))))))....(((((((......))).---.)))))))))))).((((((.......))).)))..)))))...))))))...... ( -48.80) >DroYak_CAF1 7672 106 + 1 GCUCCAAGUCCGAGCAUCUGGGGGUGGCUAUCCCGUAGCCCAUAGCUCCUCCAG--------------CGCCUCCGGAUCUCCGGCAUUGCUCGUCGCGAUGCUCCAGUUGGGCAAACUU ((.((((....(((.((((((((((((((((...))))))....(((.....))--------------)))))))))))))).((((((((.....))))))))....))))))...... ( -45.10) >consensus GGUCCAAAUCCGAGCAUCUGGGGGUGGCUAUCCCGUAGCCCACAGCUCCUCCAGCUCGAGC___AGAGCGCCUCCAGUGCGCCACCAUUGCUGGCCGCGAUGCUCCAGUUGGGCAAACUU .((((((....((((((((((((((((((((...)))))).............((((........)))))))))))(((.((((.......))))))))))))))...))))))...... (-36.04 = -39.10 + 3.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:49 2006