Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,212,074 – 6,212,164 |
Length | 90 |
Max. P | 0.707747 |
Location | 6,212,074 – 6,212,164 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 80.36 |
Mean single sequence MFE | -26.32 |
Consensus MFE | -18.79 |
Energy contribution | -18.93 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.11 |
Mean z-score | -1.44 |
Structure conservation index | 0.71 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707747 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6212074 90 + 22224390 CAUAAACC------GGAUCCC---GAAAUGGCGGCCUACUUGAACCGCACCAUCUCGAUGGUGACCGGGCAAACGGGCCCCGCCGACGACGACCGUCAC .......(------((...))---)....((((((((..(((..(((((((((....))))))..))).)))..)))))..)))((((.....)))).. ( -32.00) >DroVir_CAF1 3633 89 + 1 ----AAAC------GCAACCCAAACAAAUGGCGGCCUACUUGAAUCGCACCAUUUCACUGGUGACUGGCCAAACGGGCCCCUCCGGCAACGAUAAACAC ----....------...............((.(((((..(((.....(((((......)))))......)))..)))))))..((....))........ ( -22.20) >DroEre_CAF1 6269 90 + 1 UAUUAACC------GGAUCCC---GAAAUGGCGGCCUACUUGAACCGCACCAUCUCGCUGGUGACCGGGCAAACGGGCCCCGCCGACGACGACCAUCAC ........------((.((.(---(...(((((((((..(((..((((((((......)))))..))).)))..)))))..)))).))..))))..... ( -26.50) >DroYak_CAF1 6245 90 + 1 UAUAAACC------GGAUCCC---GAAAUGGCGGCCUACUUGAACCGCACCAUCUCGCUGGUGACCGGGCAAACGGGCCCCGCCGACGACGACCGUCAC .......(------((...))---)....((((((((..(((..((((((((......)))))..))).)))..)))))..)))((((.....)))).. ( -30.20) >DroMoj_CAF1 3727 91 + 1 --UUAAAC------GCAAACCAAACAAAUGGCGGCCUACUUGAAUCGCACCAUUUCACUGGUGACCGGCCAAACGGGCCCAUCCGCCAACGACAAAAAC --......------..............((((((.............(((((......)))))...((((.....))))...))))))........... ( -23.80) >DroAna_CAF1 3921 96 + 1 UAUAAACCGAAACGGAAUUAC---GAAAUGGCGGCCUACUUGAACCGCACCAUAUCGCUGGUAACCGGGCAAACGGCCCCCAACGACAACGACGGCAAC ......(((...((......)---)...(((.((((...(((..(((.((((......))))...))).)))..)))).)))..........))).... ( -23.20) >consensus UAUAAACC______GGAUCCC___GAAAUGGCGGCCUACUUGAACCGCACCAUCUCGCUGGUGACCGGGCAAACGGGCCCCGCCGACAACGACCAUCAC .............................((.(((((..(((..((((((((......)))))..))).)))..))))))).................. (-18.79 = -18.93 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:46 2006